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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:57.5 nTPM
HPA:57.5 nTPM
GTEx:174.3 nTPM
FANTOM5:315.7 Scaled Tags Per Million
Pig:247.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 57.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 40.1
1981 Female, age 72, midline 49.5
2565 Male, age 75, midline 45.2
2194 Female, age 79, both hemispheres 41.3
2048 Male, age 55, midline 32.2
2816 Male, age 47, midline 32.0
Cervical spinal cord, dorsal horn
nTPM: 57.5
2069 Male, age 47, both hemispheres 64.4
2173 Female, age 72, unknown 62.0
2296 Male, age 66, both hemispheres 61.9
2297 Male, age 75, both hemispheres 55.5
1877 Male, age 55, unknown 53.3
2721 Male, age 90, both hemispheres 48.1
Cervical spinal cord, ventral horn
nTPM: 46.3
2480 Male, age 75, both hemispheres 60.1
2098 Female, age 72, unknown 49.9
2809 Male, age 90, both hemispheres 48.9
2068 Male, age 55, unknown 40.5
2820 Female, age 79, both hemispheres 40.3
2295 Male, age 66, both hemispheres 37.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 174.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 174.3
Samples: 159

Max nTPM: 292.5
Min nTPM: 72.8
Std nTPM: 42.8
Median nTPM: 169.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 292.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 284.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 283.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 276.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 268.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 268.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 254.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 252.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 250.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 249.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 248.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 246.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 245.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 240.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 237.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 237.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 236.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 230.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 228.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 220.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 219.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 218.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 218.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 215.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 214.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 214.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 212.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 212.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 210.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 210.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 210.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 210.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 207.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 204.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 203.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 203.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 201.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 200.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 200.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 199.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 199.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 198.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 197.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 196.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 196.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 196.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 196.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 196.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 195.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 195.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 194.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 192.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 191.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 190.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 190.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 189.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 188.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 188.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 188.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 187.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 187.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 187.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 186.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 186.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 186.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 184.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 184.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 182.9
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 180.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 180.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 175.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 174.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 173.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 173.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 172.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 171.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 170.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 170.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 170.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 169.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 169.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 167.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 167.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 165.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 164.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 163.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 163.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 163.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 162.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 162.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 162.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 162.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 161.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 161.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 160.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 159.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 159.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 158.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 158.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 157.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 157.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 155.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 155.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 154.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 154.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 154.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 153.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 150.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 148.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 148.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 147.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 147.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 146.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 144.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 144.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 143.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 143.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 143.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 143.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 142.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 141.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 139.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 139.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 138.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 138.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 137.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 137.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 136.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 136.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 136.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 136.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 135.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 134.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 130.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 130.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 130.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 130.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 129.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 129.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 127.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 126.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 126.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 124.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 119.7
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 119.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 119.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 117.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 116.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 114.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 113.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 113.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 109.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 109.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 107.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 107.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 105.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 103.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 84.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 72.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 315.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 315.7
FF:10159-103A6 76 years, female 322.0
FF:10181-103D1 60 years, female 309.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 247.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 245.6
Samples: 4

Max nTPM: 334.3
Min nTPM: 194.8
Sample A Female 220.0
Sample B Female 194.8
Sample C Male 334.3
Sample D Male 233.4
Ventral spinal cord
nTPM: 247.4
Samples: 4

Max nTPM: 286.9
Min nTPM: 222.1
Sample A Female 258.1
Sample B Female 222.6
Sample C Male 286.9
Sample D Male 222.1

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