BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:46.6 nTPM
HPA:46.6 nTPM
GTEx:57.1 nTPM
FANTOM5:211.0 Scaled Tags Per Million
Pig:20.8 nTPM
Mouse:58.2 nTPM
Allen mouse:9.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA029273Antibody CAB034370
Glial cells Not detectedLow
Neuronal cells Not detectedLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.8
2846 Female, age 79, unknown 49.8
1781 Male, age 74, unknown 46.0
2290 Female, age 72, unknown 45.0
2288 Male, age 75, left hemisphere 44.7
2289 Male, age 61, right hemisphere 43.7
1857 Female, age 85, left hemisphere 41.3
1854 Male, age 80, left hemisphere 40.7
2481 Female, age 94, left hemisphere 38.8
Claustrum
nTPM: 42.1
2196 Female, age 79, unknown 45.4
2568 Male, age 61, both hemispheres 44.2
2292 Female, age 85, both hemispheres 43.6
2491 Male, age 75, both hemispheres 42.3
2284 Female, age 91, both hemispheres 42.2
2198 Male, age 80, both hemispheres 42.1
1956 Male, age 74, unknown 41.9
2645 Female, age 72, unknown 40.6
2392 Female, age 94, both hemispheres 37.0
Globus pallidus, externus
nTPM: 42.0
2646 Male, age 61, right hemisphere 48.1
2567 Female, age 72, unknown 45.4
2395 Male, age 75, both hemispheres 39.9
1996 Male, age 80, right hemisphere 38.9
2772 Female, age 79, unknown 37.7
Globus pallidus, internus
nTPM: 41.8
2483 Female, age 94, right hemisphere 49.4
2287 Male, age 75, right hemisphere 47.8
2566 Female, age 72, unknown 43.5
2111 Female, age 85, right hemisphere 39.7
2778 Female, age 91, both hemispheres 39.2
1818 Male, age 74, unknown 37.2
2037 Male, age 80, right hemisphere 35.8
Nucleus accumbens
nTPM: 42.2
1783 Male, age 74, unknown 51.0
2698 Female, age 72, unknown 45.7
1856 Female, age 91, right hemisphere 43.1
2824 Male, age 61, right hemisphere 41.6
1806 Female, age 85, left hemisphere 41.5
2391 Female, age 94, left hemisphere 40.4
2286 Male, age 75, left hemisphere 40.2
2732 Male, age 80, right hemisphere 34.4
Nucleus basalis of Meynert
nTPM: 43.7
2569 Male, age 61, both hemispheres 50.7
2821 Male, age 75, both hemispheres 43.9
2484 Female, age 94, left hemisphere 40.9
2393 Male, age 80, right hemisphere 39.5
Nucleus of the diagonal band
nTPM: 39.1
2775 Male, age 80, right hemisphere 42.1
1812 Female, age 91, both hemispheres 40.2
2195 Female, age 85, both hemispheres 39.5
1979 Male, age 74, unknown 38.4
2029 Male, age 61, right hemisphere 35.2
Olfactory tubercle
nTPM: 39.0
1998 Female, age 91, both hemispheres 39.8
2856 Male, age 75, right hemisphere 39.8
1846 Male, age 80, right hemisphere 39.2
2487 Female, age 94, left hemisphere 37.2
Putamen
nTPM: 46.6
2489 Female, age 72, unknown 52.7
2647 Male, age 75, left hemisphere 51.0
1829 Male, age 74, unknown 47.5
1838 Male, age 80, right hemisphere 45.8
2466 Female, age 79, unknown 44.4
2482 Female, age 94, left hemisphere 43.6
1937 Female, age 91, right hemisphere 41.3
Septal nuclei
nTPM: 37.7
1960 Male, age 74, unknown 42.5
2629 Female, age 94, right hemisphere 40.3
2059 Female, age 85, both hemispheres 37.5
2031 Female, age 72, unknown 37.1
2009 Female, age 91, both hemispheres 36.2
2394 Male, age 61, left hemisphere 35.7
2199 Male, age 80, right hemisphere 34.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 52.8
Samples: 246

Max nTPM: 82.9
Min nTPM: 26.6
Std nTPM: 10.2
Median nTPM: 51.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 82.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 82.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 79.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 79.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 78.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 77.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 75.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 75.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 73.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 73.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 72.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 54.3
Samples: 246

Max nTPM: 96.2
Min nTPM: 28.9
Std nTPM: 12.1
Median nTPM: 54.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 96.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 91.6
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 88.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 86.0
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 83.9
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 81.8
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 81.7
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 79.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 77.9
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 77.0
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 76.0
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 57.1
Samples: 205

Max nTPM: 94.2
Min nTPM: 33.9
Std nTPM: 10.8
Median nTPM: 55.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 94.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 89.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 81.8
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 80.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 80.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 80.3
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 77.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 77.8
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 77.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 77.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 76.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 211.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 189.5
FF:10164-103B2 76 years, female 189.5
Globus pallidus
Scaled Tags Per Million: 211.0
FF:10161-103A8 76 years, female 242.8
FF:10175-103C4 60 years, female 179.1
Nucleus accumbens
Scaled Tags Per Million: 188.9
FF:10037-101F1 23-56 years, mixed 188.9
Putamen
Scaled Tags Per Million: 170.2
FF:10176-103C5 60 years, female 170.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.8
Pig sample Sample description nTPM
Caudate
nTPM: 20.8
Samples: 4

Max nTPM: 27.9
Min nTPM: 12.7
Sample A Female 12.7
Sample B Female 21.6
Sample C Male 27.9
Sample D Male 20.9
Putamen
nTPM: 19.1
Samples: 4

Max nTPM: 26.7
Min nTPM: 8.9
Sample A Female 8.9
Sample B Female 18.0
Sample C Male 26.7
Sample D Male 22.9
Septum
nTPM: 14.0
Samples: 4

Max nTPM: 15.0
Min nTPM: 13.3
Sample A Female 13.6
Sample B Female 14.2
Sample C Male 15.0
Sample D Male 13.3
Ventral pallidum
nTPM: 16.1
Samples: 4

Max nTPM: 17.4
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 17.4
Sample C Male 15.7
Sample D Male 16.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 58.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 56.9
Samples: 4

Max nTPM: 59.9
Min nTPM: 54.4
Sample A Male 55.9
Sample B Male 54.4
Sample C Female 57.3
Sample D Female 59.9
Septum
nTPM: 54.7
Samples: 4

Max nTPM: 57.0
Min nTPM: 52.7
Sample A Male 57.0
Sample B Male 55.3
Sample C Female 53.8
Sample D Female 52.7
Ventral forebrain
nTPM: 58.2
Samples: 4

Max nTPM: 62.7
Min nTPM: 51.9
Sample A Male 59.3
Sample B Male 59.0
Sample C Female 51.9
Sample D Female 62.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.6
2647 Antisense, RP_040407_02_B10, Mouse strain C57BL/6J (56 days, male) 9.6
2648 Antisense, RP_040407_02_B10, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 9.0
2647 Antisense, RP_040407_02_B10, Mouse strain C57BL/6J (56 days, male) 9.0
2648 Antisense, RP_040407_02_B10, Mouse strain C57BL/6J (56 days, male) 1.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.