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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1707.2 nTPM
HPA:1707.2 nTPM
GTEx:1635.6 nTPM
FANTOM5:445.5 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1707.2
Sample id Sample description nTPM
Amygdala
nTPM: 1682.6
2814 Male, age 76, right hemisphere 1789.9
2514 Male, age 75, right hemisphere 1689.4
1987 Female, age 91, left hemisphere 1677.2
2695 Female, age 67, right hemisphere 1660.5
2517 Female, age 94, left hemisphere 1595.8
Basal amygdala
nTPM: 1638.2
1955 Male, age 76, both hemispheres 1687.2
2110 Male, age 80, left hemisphere 1683.1
2243 Female, age 91, right hemisphere 1650.3
2685 Female, age 94, left hemisphere 1622.9
2609 Male, age 75, right hemisphere 1609.3
2827 Female, age 67, right hemisphere 1576.1
Central amygdala
nTPM: 1655.6
1905 Male, age 76, both hemispheres 1739.8
2826 Female, age 94, left hemisphere 1673.3
2239 Male, age 80, left hemisphere 1655.6
2515 Male, age 75, right hemisphere 1622.0
2701 Female, age 91, right hemisphere 1587.4
Corticomedial amygdala
nTPM: 1655.3
2240 Male, age 76, both hemispheres 1706.6
2829 Male, age 80, left hemisphere 1699.5
2429 Female, age 94, left hemisphere 1669.4
2242 Female, age 91, right hemisphere 1658.3
2428 Male, age 75, right hemisphere 1625.8
2535 Female, age 67, right hemisphere 1572.3
Lateral amygdala
nTPM: 1645.0
1883 Male, age 76, both hemispheres 1776.0
2534 Female, age 94, left hemisphere 1690.7
2516 Male, age 75, right hemisphere 1659.0
2830 Female, age 67, right hemisphere 1608.3
2256 Male, age 80, left hemisphere 1572.7
2255 Female, age 91, right hemisphere 1563.5
Stria terminalis, bed nucleus
nTPM: 1707.2
1974 Female, age 91, both hemispheres 1812.5
2486 Female, age 94, both hemispheres 1679.4
2201 Male, age 74, unknown 1629.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1635.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1635.6
Samples: 152

Max nTPM: 3919.9
Min nTPM: 853.4
Std nTPM: 559.5
Median nTPM: 1526.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3919.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3844.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3644.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3637.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3378.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 2930.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2800.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2462.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2415.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2412.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2399.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2397.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2384.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2311.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2294.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2284.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2279.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 2278.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2265.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 2188.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2175.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2164.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2101.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2050.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2037.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2002.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1979.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1959.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1957.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1954.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1933.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1931.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1928.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1923.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1891.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1880.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1870.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1861.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1849.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1847.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1844.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1829.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1828.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1814.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1801.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1794.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1774.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1774.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1771.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1717.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1708.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1705.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1701.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1699.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1687.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1672.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1667.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1654.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1648.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1643.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1641.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1635.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1628.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1612.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1608.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1599.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1588.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1577.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1574.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1570.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1564.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1561.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1560.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1554.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1534.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1528.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1524.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1520.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1507.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1504.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1504.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1493.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1491.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1487.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1476.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1445.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1440.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1430.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 1418.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1416.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1412.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1405.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1399.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1398.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 1389.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1376.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1372.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1371.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1368.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1366.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1360.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1360.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1356.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1346.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1339.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1337.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1335.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1329.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1329.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1307.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1296.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1293.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1282.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1271.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1269.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1266.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1264.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1261.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1261.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1259.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1259.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1257.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1244.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1244.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1236.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1216.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1208.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1165.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1164.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1161.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1146.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1134.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1124.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1115.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1101.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1085.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1072.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1038.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1020.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1016.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1004.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 998.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 994.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 958.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 951.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 929.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 880.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 869.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 868.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 864.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 859.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 853.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 445.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 445.5
FF:10151-102I7 76 years, female 445.5

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