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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1767.2 nTPM
HPA:1767.2 nTPM
GTEx:1560.5 nTPM
FANTOM5:588.4 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1767.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1698.3
1981 Female, age 72, midline 1785.3
2194 Female, age 79, both hemispheres 1696.5
2565 Male, age 75, midline 1694.7
2048 Male, age 55, midline 1674.1
2816 Male, age 47, midline 1640.7
Cervical spinal cord, dorsal horn
nTPM: 1767.2
2296 Male, age 66, both hemispheres 1837.9
2069 Male, age 47, both hemispheres 1835.6
2173 Female, age 72, unknown 1827.2
2297 Male, age 75, both hemispheres 1734.1
1877 Male, age 55, unknown 1733.9
2721 Male, age 90, both hemispheres 1634.7
Cervical spinal cord, ventral horn
nTPM: 1755.2
2480 Male, age 75, both hemispheres 1853.4
2809 Male, age 90, both hemispheres 1808.3
2098 Female, age 72, unknown 1768.8
2068 Male, age 55, unknown 1726.5
2295 Male, age 66, both hemispheres 1707.1
2820 Female, age 79, both hemispheres 1666.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1560.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1560.5
Samples: 159

Max nTPM: 2527.5
Min nTPM: 822.7
Std nTPM: 317.3
Median nTPM: 1545.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2527.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 2523.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2422.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2292.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2259.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 2147.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 2111.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 2100.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2097.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 2091.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 2080.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2035.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2034.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1984.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1980.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1976.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1975.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1973.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1966.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1942.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1938.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1934.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1925.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1922.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1891.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1863.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1856.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1850.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1848.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1827.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1820.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1819.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1805.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1795.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1790.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1764.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1760.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1754.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1748.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1746.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1742.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1730.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1714.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1711.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1708.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1707.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1706.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1704.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1696.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1694.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1690.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1690.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1688.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1675.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1670.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1655.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1651.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1643.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1636.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1623.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1621.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1619.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1615.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1601.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1595.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1592.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1589.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1583.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1582.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1576.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1575.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1575.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1572.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1569.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1568.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1566.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1550.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1546.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1545.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1545.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1541.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1535.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1531.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1529.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1528.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1523.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1520.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1516.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1511.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1504.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1503.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1499.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1488.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1480.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1465.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1463.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1458.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1428.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 1426.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1422.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1409.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1409.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1408.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1400.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1400.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1399.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1399.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 1394.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1394.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1390.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1385.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1384.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1384.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1384.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1381.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1374.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1370.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1369.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1364.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1355.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1346.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 1343.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1323.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1306.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 1296.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1277.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1272.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1268.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 1264.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1258.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1257.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1256.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1253.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1247.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1238.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 1237.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1230.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1228.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1228.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1225.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1212.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1206.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 1201.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 1177.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 1177.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1173.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1166.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 1165.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1158.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 1133.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1126.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1106.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1033.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 1032.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1009.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 975.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 872.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 849.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 822.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 588.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 588.4
FF:10181-103D1 60 years, female 630.4
FF:10159-103A6 76 years, female 546.4

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