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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1860.7 nTPM
HPA:1860.7 nTPM
FANTOM5:1084.3 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 1860.7
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1709.0
2188 Female, age 91, both hemispheres 1785.7
2301 Female, age 85, both hemispheres 1716.2
2090 Male, age 80, both hemispheres 1673.5
1984 Male, age 76, both hemispheres 1660.4
Dorsal cochlear nucleus
nTPM: 1663.0
2187 Female, age 91, both hemispheres 1736.6
2802 Male, age 74, right hemisphere 1716.8
2058 Male, age 76, both hemispheres 1626.5
2378 Male, age 80, both hemispheres 1620.6
2370 Male, age 61, both hemispheres 1614.8
Dorsal tegmental nucleus
nTPM: 1688.5
2326 Male, age 74, both hemispheres 1748.8
2083 Male, age 80, both hemispheres 1734.2
1936 Male, age 76, left hemisphere 1659.7
2358 Male, age 61, both hemispheres 1611.5
Dorsolateral tegmental area
nTPM: 1680.7
2654 Male, age 80, both hemispheres 1710.5
2751 Female, age 85, both hemispheres 1703.7
2337 Male, age 61, both hemispheres 1687.3
2360 Male, age 74, both hemispheres 1666.9
2141 Male, age 76, both hemispheres 1635.0
Kolliker-Fuse nucleus
nTPM: 1749.9
2793 Female, age 91, left hemisphere 1825.0
2163 Male, age 80, both hemispheres 1768.6
2315 Male, age 76, right hemisphere 1656.2
Lateral lemniscal nuclei
nTPM: 1793.6
2036 Male, age 80, both hemispheres 1921.6
2169 Male, age 76, both hemispheres 1843.0
2746 Female, age 85, left hemisphere 1761.4
2453 Male, age 74, right hemisphere 1742.7
2320 Female, age 91, left hemisphere 1699.4
Lateral parabrachial nucleus
nTPM: 1727.5
2139 Female, age 85, right hemisphere 1840.0
2013 Male, age 80, both hemispheres 1724.5
2792 Male, age 76, both hemispheres 1701.7
2790 Male, age 61, both hemispheres 1643.5
Lateral vestibular nucleus
nTPM: 1696.3
2184 Male, age 76, both hemispheres 1715.2
2311 Male, age 80, both hemispheres 1677.3
Locus coeruleus
nTPM: 1766.7
2123 Female, age 91, both hemispheres 1877.1
2014 Male, age 55, unknown 1803.0
2720 Male, age 74, both hemispheres 1779.2
2788 Male, age 74, unknown 1766.4
1980 Male, age 76, both hemispheres 1748.4
2317 Female, age 72, unknown 1708.0
2162 Male, age 80, both hemispheres 1684.6
Medial olivary nucleus
nTPM: 1696.2
1943 Male, age 61, both hemispheres 1706.8
2851 Male, age 80, both hemispheres 1705.1
2138 Female, age 91, both hemispheres 1695.5
1962 Male, age 76, both hemispheres 1677.2
Medial parabrachial nucleus
nTPM: 1710.7
2170 Female, age 91, both hemispheres 1799.7
2854 Male, age 80, both hemispheres 1782.4
2786 Male, age 76, both hemispheres 1669.2
2156 Male, age 61, both hemispheres 1657.1
2463 Female, age 85, right hemisphere 1644.8
Medial periolivary nuclei
nTPM: 1787.6
2171 Female, age 85, both hemispheres 1909.3
2063 Male, age 76, both hemispheres 1839.2
2791 Male, age 74, right hemisphere 1817.6
2458 Female, age 91, both hemispheres 1687.2
2081 Male, age 80, both hemispheres 1684.5
Motor facial nucleus
nTPM: 1781.1
2365 Male, age 74, right hemisphere 1886.6
2062 Male, age 76, both hemispheres 1858.3
2697 Female, age 85, both hemispheres 1840.2
2327 Male, age 80, both hemispheres 1715.1
2126 Male, age 61, both hemispheres 1698.1
2795 Female, age 91, both hemispheres 1688.3
Motor trigeminal nucleus
nTPM: 1699.7
2560 Male, age 74, both hemispheres 1760.4
2079 Male, age 80, both hemispheres 1746.9
2335 Male, age 61, both hemispheres 1679.0
2321 Female, age 91, both hemispheres 1667.4
2309 Male, age 76, both hemispheres 1644.9
Nuclei of the trapezoid body
nTPM: 1829.5
2159 Male, age 61, both hemispheres 1993.4
1983 Male, age 76, both hemispheres 1900.0
2735 Female, age 85, both hemispheres 1857.1
2166 Male, age 80, both hemispheres 1728.4
2368 Female, age 91, both hemispheres 1668.8
Paramedian reticular nucleus
nTPM: 1780.1
2050 Female, age 85, both hemispheres 1871.4
2313 Male, age 61, both hemispheres 1778.9
2052 Male, age 76, both hemispheres 1735.4
2057 Male, age 80, both hemispheres 1734.6
Pontine nuclei
nTPM: 1860.7
2727 Male, age 61, right hemisphere 2001.8
1863 Male, age 55, unknown 1996.4
2787 Female, age 85, both hemispheres 1957.0
2109 Female, age 72, unknown 1864.3
2454 Male, age 74, left hemisphere 1845.8
1968 Male, age 76, left hemisphere 1827.1
2319 Female, age 91, both hemispheres 1724.9
2115 Male, age 80, left hemisphere 1668.5
Pontine raphe nucleus
nTPM: 1733.8
2122 Female, age 85, midline 1812.9
2853 Male, age 76, midline 1654.6
Posteroventral cochlear nucleus
nTPM: 1716.2
2752 Female, age 85, both hemispheres 1767.1
2135 Female, age 91, both hemispheres 1741.7
2341 Male, age 80, both hemispheres 1739.7
2070 Male, age 76, both hemispheres 1694.1
2371 Male, age 61, both hemispheres 1638.6
Principal sensory trigeminal nucleus
nTPM: 1795.1
2158 Male, age 61, both hemispheres 1953.2
2008 Male, age 80, left hemisphere 1791.4
2367 Female, age 91, left hemisphere 1729.8
2324 Male, age 76, both hemispheres 1705.9
Reticular pontine nucleus, caudal
nTPM: 1744.4
2092 Male, age 76, both hemispheres 1801.3
2332 Male, age 80, right hemisphere 1739.8
2559 Male, age 74, both hemispheres 1736.6
2457 Female, age 91, both hemispheres 1699.9
Reticular pontine nucleus, oral
nTPM: 1737.9
2361 Male, age 74, both hemispheres 1755.8
2012 Female, age 85, both hemispheres 1755.2
2366 Female, age 91, both hemispheres 1745.8
1939 Male, age 80, both hemispheres 1740.0
2167 Male, age 76, both hemispheres 1692.7
Reticulotegmental nucleus
nTPM: 1704.2
2322 Female, age 91, both hemispheres 1720.7
2325 Male, age 76, both hemispheres 1717.6
2452 Male, age 74, both hemispheres 1692.7
2333 Male, age 80, both hemispheres 1686.0
Spinal trigeminal nucleus, oral
nTPM: 1692.4
2737 Female, age 85, both hemispheres 1700.5
2164 Male, age 80, both hemispheres 1695.7
1978 Male, age 76, both hemispheres 1681.0
Subcoeruleus area
nTPM: 1723.1
1958 Male, age 80, both hemispheres 1788.2
2323 Female, age 91, left hemisphere 1754.3
2089 Male, age 76, left hemisphere 1720.2
2369 Female, age 85, left hemisphere 1680.9
2451 Male, age 74, both hemispheres 1671.8
Superior olive
nTPM: 1776.1
1875 Female, age 85, both hemispheres 1926.6
2020 Male, age 76, both hemispheres 1770.3
2364 Male, age 74, right hemisphere 1745.6
2561 Female, age 91, both hemispheres 1726.6
2329 Male, age 80, right hemisphere 1711.5
Superior vestibular nucleus
nTPM: 1708.8
2383 Male, age 74, both hemispheres 1780.2
2015 Male, age 80, both hemispheres 1704.0
2061 Male, age 76, both hemispheres 1642.3
Ventral periolivary nuclei
nTPM: 1785.7
2130 Female, age 85, both hemispheres 1866.1
2165 Male, age 80, both hemispheres 1817.9
2023 Male, age 76, both hemispheres 1756.3
2794 Female, age 91, left hemisphere 1702.7
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1739.9
1959 Male, age 76, both hemispheres 1814.8
2840 Female, age 85, both hemispheres 1812.7
2449 Male, age 74, both hemispheres 1791.9
2161 Male, age 80, both hemispheres 1711.0
2456 Female, age 91, both hemispheres 1661.9
2359 Male, age 61, both hemispheres 1647.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1084.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 583.4
FF:10182-103D2 60 years, female 627.5
FF:10165-103B3 76 years, female 539.3
Pons
Scaled Tags Per Million: 1084.3
FF:10033-101E6 18-54 years, mixed 1084.3

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