MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:110.1 nTPM
HPA:110.1 nTPM
GTEx:107.2 nTPM
FANTOM5:113.8 Scaled Tags Per Million
Pig:29.5 nTPM
Mouse:119.5 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.5
1827 Male, age 72, unknown 111.6
2219 Male, age 76, both hemispheres 107.7
2586 Male, age 75, left hemisphere 106.6
2666 Male, age 74, left hemisphere 104.9
2828 Female, age 72, unknown 99.4
1833 Male, age 53, unknown 91.7
2411 Female, age 72, unknown 89.7
1870 Female, age 42, unknown 88.6
1830 Male, age 51, unknown 88.4
2019 Male, age 18, unknown 86.9
Dorsal raphe nucleus
nTPM: 90.5
2047 Male, age 72, unknown 97.7
2750 Male, age 76, both hemispheres 94.4
2298 Female, age 72, unknown 90.1
1828 Male, age 53, unknown 87.1
2016 Female, age 72, unknown 83.1
Inferior colliculus
nTPM: 98.0
2097 Female, age 72, unknown 102.3
1848 Female, age 42, unknown 97.3
1890 Male, age 53, unknown 96.6
2849 Male, age 72, unknown 96.0
Median raphe nucleus
nTPM: 108.7
2220 Male, age 76, midline 108.7
Pedunculopontine tegmental nucleus
nTPM: 95.5
1921 Female, age 85, both hemispheres 103.0
2338 Male, age 61, both hemispheres 94.4
2334 Male, age 80, both hemispheres 89.2
Periaquaductal grey, anterior
nTPM: 108.7
1947 Male, age 18, unknown 116.7
1795 Male, age 51, unknown 106.1
2502 Female, age 75, unknown 103.3
Periaquaductal grey, dorsal
nTPM: 91.5
1840 Male, age 53, unknown 99.0
2464 Female, age 72, unknown 94.7
1831 Male, age 72, unknown 93.9
2850 Male, age 76, both hemispheres 78.2
Periaquaductal grey, lateral
nTPM: 86.9
2053 Male, age 18, unknown 94.5
2140 Male, age 76, both hemispheres 84.8
2272 Male, age 74, both hemispheres 81.5
Pretectal area
nTPM: 100.1
1816 Male, age 51, unknown 120.7
2407 Male, age 75, both hemispheres 114.7
1944 Female, age 72, unknown 109.1
2007 Male, age 72, unknown 104.5
1815 Male, age 53, unknown 101.3
1817 Female, age 42, unknown 98.7
2224 Female, age 72, unknown 95.6
2825 Male, age 18, unknown 95.0
2316 Male, age 76, right hemisphere 92.0
2667 Female, age 75, unknown 90.9
2273 Male, age 74, both hemispheres 78.3
Red nucleus
nTPM: 86.9
2584 Male, age 75, left hemisphere 113.2
2725 Female, age 75, unknown 90.0
2588 Male, age 74, left hemisphere 87.3
1954 Female, age 42, unknown 85.7
2785 Male, age 18, unknown 85.1
2227 Male, age 72, unknown 85.0
1904 Male, age 53, unknown 84.9
2503 Female, age 72, unknown 84.2
1821 Female, age 72, unknown 83.6
1865 Male, age 51, unknown 82.8
2769 Male, age 72, unknown 82.6
2823 Male, age 76, right hemisphere 78.8
Substantia nigra
nTPM: 110.1
1916 Female, age 42, unknown 121.5
2590 Female, age 75, unknown 120.7
1851 Male, age 51, unknown 115.5
2665 Male, age 74, both hemispheres 115.4
1941 Male, age 53, unknown 112.6
2699 Male, age 18, unknown 104.5
1889 Female, age 72, unknown 104.4
2409 Female, age 72, unknown 103.8
2583 Male, age 75, right hemisphere 101.9
2241 Male, age 72, unknown 100.4
Superior colliculus
nTPM: 99.9
2664 Male, age 75, both hemispheres 110.1
1796 Male, age 53, unknown 108.4
1895 Male, age 76, right hemisphere 108.0
2087 Female, age 72, unknown 107.5
2261 Male, age 18, unknown 105.3
2668 Female, age 75, unknown 99.5
1839 Male, age 51, unknown 93.3
2587 Male, age 74, left hemisphere 90.5
1913 Female, age 42, unknown 88.9
1995 Male, age 72, unknown 87.4
Ventral tegmental area
nTPM: 101.7
2218 Male, age 76, both hemispheres 110.7
1915 Female, age 42, unknown 106.7
2410 Female, age 72, unknown 105.9
1942 Male, age 51, unknown 100.5
2223 Female, age 72, unknown 94.2
2021 Male, age 53, unknown 92.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 107.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 107.2
Samples: 139

Max nTPM: 217.8
Min nTPM: 35.1
Std nTPM: 39.9
Median nTPM: 102.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 217.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 213.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 197.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 192.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 189.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 183.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 178.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 178.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 178.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 177.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 172.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 113.8
FF:10158-103A5 76 years, female 113.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.5
Pig sample Sample description nTPM
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 42.4
Min nTPM: 18.0
Sample A Female 18.0
Sample B Female 24.4
Sample C Male 42.4
Sample D Male 33.0
Periaqueductal gray
nTPM: 23.2
Samples: 3

Max nTPM: 27.8
Min nTPM: 20.2
Sample B Female 21.7
Sample C Male 27.8
Sample D Male 20.2
Substantia nigra
nTPM: 25.3
Samples: 4

Max nTPM: 31.2
Min nTPM: 20.9
Sample A Female 27.8
Sample B Female 21.4
Sample C Male 31.2
Sample D Male 20.9
Superior colliculi
nTPM: 29.3
Samples: 4

Max nTPM: 34.1
Min nTPM: 20.7
Sample A Female 30.6
Sample B Female 20.7
Sample C Male 34.1
Sample D Male 31.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 119.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.5
Samples: 4

Max nTPM: 126.4
Min nTPM: 111.9
Sample A Male 122.5
Sample B Male 111.9
Sample C Female 117.2
Sample D Female 126.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
69838381 Antisense, RP_050301_02_G07, Mouse strain C57BL/6J (56 days, male) 9.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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