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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:204.6 nTPM
GTEx:204.6 nTPM
FANTOM5:187.8 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:126.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 204.6
GTEx sample id Sample description nTPM
Retina
Average nTPM: 204.6
Samples: 105

Max nTPM: 464.0
Min nTPM: 58.6
Std nTPM: 71.8
Median nTPM:
352_1 62 years, male 464.0
321_1 62 years, female 373.3
229_1 69 years, female 337.5
375_1 74 years, female 322.3
218_1 71 years, female 321.6
286_1 68 years, female 321.5
447_1 81 years, male 315.7
355_1 70 years, female 308.4
386_1 76 years, male 308.1
376_1 75 years, female 300.8
172_1 72 years, female 300.2
246_1 77 years, male 299.0
319_1 81 years, male 298.2
316_1 62 years, male 294.8
379_1 60 years, male 290.3
237_1 82 years, male 284.3
425_1 59 years, female 276.1
354_1 81 years, female 275.0
356_1 87 years, female 274.7
217_1 76 years, male 270.0
389_1 86 years, female 268.6
243_1 75 years, male 266.6
350_1 84 years, female 260.1
347_1 72 years, male 259.5
353_1 82 years, female 259.4
292_1 71 years, male 255.8
394_1 75 years, female 253.5
349_1 83 years, male 249.9
499_1 55 years, female 249.4
266_1 85 years, male 243.7
377_1 82 years, female 242.2
320_1 89 years, female 240.6
163_1 78 years, male 239.0
404_1 82 years, female 236.6
177_1 74 years, male 235.6
318_1 68 years, male 232.7
480_1 63 years, male 232.7
6_1 73 years, female 223.7
468_1 89 years, male 223.3
405_1 91 years, male 223.1
406_1 79 years, male 222.6
293_1 68 years, female 222.4
251_1 78 years, male 219.9
348_1 84 years, male 217.7
265_1 87 years, male 213.5
517_1 88 years, male 213.2
526_1 61 years, male 211.4
384_1 83 years, male 211.3
518_1 75 years, female 210.5
396_1 62 years, male 210.3
503_1 68 years, male 207.3
322_1 76 years, male 206.2
506_1 65 years, male 206.2
324_1 76 years, male 204.8
351_1 91 years, male 202.6
311_1 78 years, male 199.2
189_1 76 years, male 190.6
313_1 79 years, female 190.5
153_1 70 years, female 187.8
173_1 67 years, male 187.1
291_1 76 years, male 187.1
35_1 74 years, female 181.3
295_1 61 years, female 179.9
99_1 64 years, male 172.9
317_1 60 years, male 168.6
335_1 73 years, female 167.5
288_1 66 years, female 167.1
307_1 66 years, female 165.2
120_1 70 years, female 164.9
115_1 83 years, male 162.4
452_1 88 years, female 160.0
145_1 84 years, male 159.1
126_1 63 years, male 155.2
415_1 77 years, female 153.8
264_1 73 years, female 153.7
117_1 61 years, male 153.1
18_1 88 years, male 151.3
254_1 77 years, female 151.3
17_1 71 years, male 149.5
81_1 67 years, male 147.1
2_1 77 years, female 146.0
315_1 62 years, female 145.4
142_1 61 years, female 145.3
9_1 66 years, female 144.2
314_1 67 years, male 143.5
137_1 83 years, male 142.0
139_1 64 years, female 137.1
162_1 79 years, female 135.3
119_1 70 years, female 133.6
32_1 67 years, male 133.5
43_1 64 years, female 130.6
414_1 84 years, female 129.4
4_1 88 years, female 129.2
466_1 57 years, female 122.5
109_1 81 years, female 120.2
495_1 57 years, female 119.5
42_1 85 years, male 118.6
41_1 94 years, female 101.4
501_1 88 years, male 100.3
413_1 59 years, female 97.4
89_1 63 years, male 91.8
149_1 88 years, male 91.1
308_1 70 years, female 81.6
490_1 67 years, female 69.7
491_1 89 years, female 58.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 187.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 187.8
FF:10030-101E3 24-65 years, mixed 187.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.8
Pig sample Sample description nTPM
Retina
nTPM: 19.9
Samples: 4

Max nTPM: 20.9
Min nTPM: 19.3
Sample A Female 19.4
Sample B Female 19.3
Sample C Male 20.9
Sample D Male 19.8

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 126.0
Mouse sample Sample description nTPM
Retina
nTPM: 126.0
Samples: 4

Max nTPM: 149.6
Min nTPM: 106.3
Sample A Male 113.4
Sample B Male 134.5
Sample C Female 149.6
Sample D Female 106.3

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