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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:84.9 nTPM
HPA:84.9 nTPM
GTEx:95.1 nTPM
FANTOM5:156.1 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:14.1 nTPM
Allen mouse:3.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 84.9
Sample id Sample description nTPM
Amygdala
nTPM: 83.4
2514 Male, age 75, right hemisphere 89.4
1987 Female, age 91, left hemisphere 85.1
2814 Male, age 76, right hemisphere 83.0
2695 Female, age 67, right hemisphere 80.1
2517 Female, age 94, left hemisphere 79.6
Basal amygdala
nTPM: 77.2
2609 Male, age 75, right hemisphere 82.4
2110 Male, age 80, left hemisphere 81.7
2243 Female, age 91, right hemisphere 78.9
1955 Male, age 76, both hemispheres 77.7
2685 Female, age 94, left hemisphere 75.0
2827 Female, age 67, right hemisphere 67.7
Central amygdala
nTPM: 78.9
2515 Male, age 75, right hemisphere 84.1
1905 Male, age 76, both hemispheres 80.3
2239 Male, age 80, left hemisphere 78.8
2701 Female, age 91, right hemisphere 76.1
2826 Female, age 94, left hemisphere 75.2
Corticomedial amygdala
nTPM: 78.5
2428 Male, age 75, right hemisphere 86.6
2829 Male, age 80, left hemisphere 82.5
2429 Female, age 94, left hemisphere 79.7
2242 Female, age 91, right hemisphere 78.2
2240 Male, age 76, both hemispheres 77.5
2535 Female, age 67, right hemisphere 66.5
Lateral amygdala
nTPM: 76.7
2516 Male, age 75, right hemisphere 83.9
1883 Male, age 76, both hemispheres 82.3
2534 Female, age 94, left hemisphere 77.4
2255 Female, age 91, right hemisphere 73.2
2256 Male, age 80, left hemisphere 72.7
2830 Female, age 67, right hemisphere 70.8
Stria terminalis, bed nucleus
nTPM: 84.9
1974 Female, age 91, both hemispheres 92.1
2486 Female, age 94, both hemispheres 82.8
2201 Male, age 74, unknown 80.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 95.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 95.1
Samples: 152

Max nTPM: 146.8
Min nTPM: 65.5
Std nTPM: 15.2
Median nTPM: 91.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 146.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 141.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 134.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 130.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 129.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 127.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 123.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 123.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 123.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 119.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 119.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 119.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 118.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 118.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 118.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 117.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 117.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 114.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 114.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 113.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 113.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 112.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 111.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 111.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 111.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 110.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 109.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 109.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 109.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 109.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 108.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 108.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 108.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 107.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 107.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 106.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 106.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 106.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 105.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 104.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 102.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 102.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 102.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 100.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 100.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 99.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 99.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 99.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 99.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 99.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 98.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 98.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 98.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 97.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 97.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 97.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 97.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 97.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 96.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 96.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 95.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 95.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 94.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 93.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 93.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 93.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 93.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 93.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 92.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 92.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 92.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 92.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 91.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 91.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 91.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 91.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 91.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 91.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 90.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 90.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 90.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 90.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 90.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 89.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 89.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 89.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 89.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 89.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 89.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 89.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 89.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 89.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 89.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 88.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 88.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 88.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 88.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 87.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 87.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 87.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 87.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 87.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 86.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 86.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 85.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 85.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 85.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 84.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 84.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 84.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 84.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 83.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 83.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 83.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 83.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 83.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 83.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 82.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 82.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 82.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 82.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 82.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 82.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 81.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 81.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 81.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 80.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 80.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 80.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 80.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 79.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 78.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 78.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 78.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 78.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 77.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 77.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 77.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 77.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 77.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 76.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 76.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 76.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 76.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 75.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 75.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 74.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 74.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 73.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 68.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 65.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 156.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 156.1
FF:10151-102I7 76 years, female 156.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 9.9
Pig sample Sample description nTPM
Amygdala
nTPM: 9.9
Samples: 4

Max nTPM: 12.5
Min nTPM: 7.5
Sample A Female 12.5
Sample B Female 11.5
Sample C Male 8.0
Sample D Male 7.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 14.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 14.1
Samples: 4

Max nTPM: 14.5
Min nTPM: 13.6
Sample A Male 14.5
Sample B Male 13.6
Sample C Female 14.4
Sample D Female 13.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.4
68631893 Antisense, RP_050125_01_C09, Mouse strain C57BL/6J (56 days, male) 3.4

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