MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:86.8 nTPM
HPA:86.8 nTPM
GTEx:97.9 nTPM
FANTOM5:131.4 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:18.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 86.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.3
2411 Female, age 72, unknown 86.9
1870 Female, age 42, unknown 86.5
1827 Male, age 72, unknown 83.0
2019 Male, age 18, unknown 80.7
1833 Male, age 53, unknown 79.7
1830 Male, age 51, unknown 78.2
2219 Male, age 76, both hemispheres 78.2
2828 Female, age 72, unknown 78.2
2666 Male, age 74, left hemisphere 77.7
2586 Male, age 75, left hemisphere 73.6
Dorsal raphe nucleus
nTPM: 85.0
2298 Female, age 72, unknown 95.0
2750 Male, age 76, both hemispheres 85.6
2047 Male, age 72, unknown 83.8
1828 Male, age 53, unknown 81.1
2016 Female, age 72, unknown 79.6
Inferior colliculus
nTPM: 81.4
2097 Female, age 72, unknown 86.0
1848 Female, age 42, unknown 81.4
1890 Male, age 53, unknown 79.1
2849 Male, age 72, unknown 78.8
Median raphe nucleus
nTPM: 86.8
2220 Male, age 76, midline 86.8
Pedunculopontine tegmental nucleus
nTPM: 85.4
2334 Male, age 80, both hemispheres 87.0
2338 Male, age 61, both hemispheres 84.9
1921 Female, age 85, both hemispheres 84.4
Periaquaductal grey, anterior
nTPM: 82.5
1947 Male, age 18, unknown 86.6
2502 Female, age 75, unknown 81.2
1795 Male, age 51, unknown 79.8
Periaquaductal grey, dorsal
nTPM: 79.8
1840 Male, age 53, unknown 83.5
2850 Male, age 76, both hemispheres 80.8
2464 Female, age 72, unknown 77.8
1831 Male, age 72, unknown 76.9
Periaquaductal grey, lateral
nTPM: 80.4
2272 Male, age 74, both hemispheres 82.4
2140 Male, age 76, both hemispheres 79.5
2053 Male, age 18, unknown 79.3
Pretectal area
nTPM: 83.0
2224 Female, age 72, unknown 86.6
2273 Male, age 74, both hemispheres 85.7
2667 Female, age 75, unknown 85.1
1816 Male, age 51, unknown 84.6
1817 Female, age 42, unknown 84.6
2007 Male, age 72, unknown 83.4
1815 Male, age 53, unknown 82.6
1944 Female, age 72, unknown 82.5
2825 Male, age 18, unknown 81.7
2316 Male, age 76, right hemisphere 80.3
2407 Male, age 75, both hemispheres 75.9
Red nucleus
nTPM: 80.6
1821 Female, age 72, unknown 88.6
2725 Female, age 75, unknown 84.6
1954 Female, age 42, unknown 83.4
2503 Female, age 72, unknown 81.9
1865 Male, age 51, unknown 81.4
1904 Male, age 53, unknown 81.2
2227 Male, age 72, unknown 80.2
2769 Male, age 72, unknown 79.8
2785 Male, age 18, unknown 79.1
2823 Male, age 76, right hemisphere 78.4
2588 Male, age 74, left hemisphere 74.7
2584 Male, age 75, left hemisphere 74.1
Substantia nigra
nTPM: 85.8
2241 Male, age 72, unknown 94.5
1916 Female, age 42, unknown 94.3
1851 Male, age 51, unknown 90.0
1889 Female, age 72, unknown 86.9
1941 Male, age 53, unknown 86.7
2699 Male, age 18, unknown 82.8
2409 Female, age 72, unknown 81.6
2665 Male, age 74, both hemispheres 81.6
2590 Female, age 75, unknown 81.4
2583 Male, age 75, right hemisphere 78.1
Superior colliculus
nTPM: 79.7
1895 Male, age 76, right hemisphere 83.9
2587 Male, age 74, left hemisphere 83.9
1796 Male, age 53, unknown 83.3
2087 Female, age 72, unknown 81.1
2261 Male, age 18, unknown 80.9
1839 Male, age 51, unknown 79.3
2668 Female, age 75, unknown 78.4
1913 Female, age 42, unknown 78.1
1995 Male, age 72, unknown 76.1
2664 Male, age 75, both hemispheres 71.6
Ventral tegmental area
nTPM: 85.0
1915 Female, age 42, unknown 89.5
2410 Female, age 72, unknown 88.8
2223 Female, age 72, unknown 83.7
2218 Male, age 76, both hemispheres 83.6
1942 Male, age 51, unknown 83.1
2021 Male, age 53, unknown 81.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.9
Samples: 139

Max nTPM: 195.7
Min nTPM: 68.7
Std nTPM: 17.8
Median nTPM: 93.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 195.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 146.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 144.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 142.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 140.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 138.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 129.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 129.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 128.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 126.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 124.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 131.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.4
FF:10158-103A5 76 years, female 131.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.2
Pig sample Sample description nTPM
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 28.6
Min nTPM: 11.0
Sample A Female 28.6
Sample B Female 17.2
Sample C Male 11.9
Sample D Male 11.0
Periaqueductal gray
nTPM: 13.1
Samples: 3

Max nTPM: 15.6
Min nTPM: 11.3
Sample B Female 15.6
Sample C Male 12.4
Sample D Male 11.3
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 18.9
Min nTPM: 14.5
Sample A Female 18.9
Sample B Female 14.5
Sample C Male 15.4
Sample D Male 16.7
Superior colliculi
nTPM: 15.1
Samples: 4

Max nTPM: 16.8
Min nTPM: 13.6
Sample A Female 16.5
Sample B Female 16.8
Sample C Male 13.6
Sample D Male 13.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 20.0
Min nTPM: 16.5
Sample A Male 20.0
Sample B Male 16.5
Sample C Female 18.3
Sample D Female 19.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68631893 Antisense, RP_050125_01_C09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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