MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:128.9 nTPM
HPA:128.9 nTPM
GTEx:113.1 nTPM
FANTOM5:16.3 Scaled Tags Per Million
Mouse:40.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 128.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 123.2
2586 Male, age 75, left hemisphere 136.0
1827 Male, age 72, unknown 127.9
2666 Male, age 74, left hemisphere 124.6
1870 Female, age 42, unknown 122.0
2411 Female, age 72, unknown 121.7
2828 Female, age 72, unknown 121.6
2019 Male, age 18, unknown 121.5
1833 Male, age 53, unknown 120.6
2219 Male, age 76, both hemispheres 118.1
1830 Male, age 51, unknown 117.6
Dorsal raphe nucleus
nTPM: 123.2
2298 Female, age 72, unknown 127.4
2750 Male, age 76, both hemispheres 124.2
1828 Male, age 53, unknown 122.8
2047 Male, age 72, unknown 121.8
2016 Female, age 72, unknown 119.9
Inferior colliculus
nTPM: 126.8
2097 Female, age 72, unknown 131.2
1890 Male, age 53, unknown 125.9
2849 Male, age 72, unknown 125.3
1848 Female, age 42, unknown 124.9
Median raphe nucleus
nTPM: 128.3
2220 Male, age 76, midline 128.3
Pedunculopontine tegmental nucleus
nTPM: 123.3
2334 Male, age 80, both hemispheres 125.1
2338 Male, age 61, both hemispheres 122.9
1921 Female, age 85, both hemispheres 121.8
Periaquaductal grey, anterior
nTPM: 128.9
1795 Male, age 51, unknown 129.8
2502 Female, age 75, unknown 128.7
1947 Male, age 18, unknown 128.3
Periaquaductal grey, dorsal
nTPM: 123.0
1840 Male, age 53, unknown 128.4
2464 Female, age 72, unknown 122.0
2850 Male, age 76, both hemispheres 121.6
1831 Male, age 72, unknown 120.1
Periaquaductal grey, lateral
nTPM: 120.4
2053 Male, age 18, unknown 121.4
2140 Male, age 76, both hemispheres 120.1
2272 Male, age 74, both hemispheres 119.8
Pretectal area
nTPM: 125.5
2007 Male, age 72, unknown 131.7
1816 Male, age 51, unknown 130.7
1817 Female, age 42, unknown 130.4
1944 Female, age 72, unknown 129.7
2825 Male, age 18, unknown 125.9
2224 Female, age 72, unknown 125.8
1815 Male, age 53, unknown 124.4
2667 Female, age 75, unknown 123.6
2273 Male, age 74, both hemispheres 121.9
2407 Male, age 75, both hemispheres 120.6
2316 Male, age 76, right hemisphere 115.5
Red nucleus
nTPM: 123.9
1821 Female, age 72, unknown 130.6
2503 Female, age 72, unknown 127.6
2769 Male, age 72, unknown 126.1
2227 Male, age 72, unknown 125.9
2725 Female, age 75, unknown 125.2
2785 Male, age 18, unknown 124.4
2588 Male, age 74, left hemisphere 124.2
1954 Female, age 42, unknown 123.0
1904 Male, age 53, unknown 121.5
1865 Male, age 51, unknown 121.4
2584 Male, age 75, left hemisphere 119.8
2823 Male, age 76, right hemisphere 117.2
Substantia nigra
nTPM: 126.0
1916 Female, age 42, unknown 135.9
1851 Male, age 51, unknown 130.9
1889 Female, age 72, unknown 129.0
1941 Male, age 53, unknown 128.2
2665 Male, age 74, both hemispheres 126.3
2583 Male, age 75, right hemisphere 122.9
2699 Male, age 18, unknown 122.2
2409 Female, age 72, unknown 122.0
2241 Male, age 72, unknown 121.9
2590 Female, age 75, unknown 120.3
Superior colliculus
nTPM: 123.4
2668 Female, age 75, unknown 129.0
2087 Female, age 72, unknown 127.7
2664 Male, age 75, both hemispheres 127.6
1796 Male, age 53, unknown 127.4
2261 Male, age 18, unknown 125.5
1839 Male, age 51, unknown 120.4
1895 Male, age 76, right hemisphere 120.3
2587 Male, age 74, left hemisphere 120.0
1995 Male, age 72, unknown 118.1
1913 Female, age 42, unknown 117.6
Ventral tegmental area
nTPM: 125.9
2410 Female, age 72, unknown 131.2
1915 Female, age 42, unknown 130.1
1942 Male, age 51, unknown 126.8
2223 Female, age 72, unknown 123.8
2218 Male, age 76, both hemispheres 123.1
2021 Male, age 53, unknown 120.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 113.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 113.1
Samples: 139

Max nTPM: 284.0
Min nTPM: 43.6
Std nTPM: 34.5
Median nTPM: 106.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 284.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 208.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 201.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 196.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 193.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 191.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 181.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 175.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 168.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 166.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 162.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.3
FF:10158-103A5 76 years, female 16.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 43.2
Min nTPM: 38.8
Sample A Male 41.8
Sample B Male 39.9
Sample C Female 38.8
Sample D Female 43.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68545875 Antisense, RP_050120_01_F05, Mouse strain C57BL/6J (56 days, male) 0.0

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