MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:122.9 nTPM
HPA:122.9 nTPM
GTEx:198.5 nTPM
FANTOM5:137.0 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 122.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.3
2666 Male, age 74, left hemisphere 114.3
1870 Female, age 42, unknown 113.4
2219 Male, age 76, both hemispheres 113.0
1833 Male, age 53, unknown 111.6
1827 Male, age 72, unknown 111.0
2411 Female, age 72, unknown 110.2
1830 Male, age 51, unknown 109.1
2586 Male, age 75, left hemisphere 108.3
2828 Female, age 72, unknown 108.3
2019 Male, age 18, unknown 103.7
Dorsal raphe nucleus
nTPM: 104.5
2750 Male, age 76, both hemispheres 108.3
1828 Male, age 53, unknown 107.4
2047 Male, age 72, unknown 105.7
2016 Female, age 72, unknown 102.5
2298 Female, age 72, unknown 98.6
Inferior colliculus
nTPM: 110.8
2849 Male, age 72, unknown 122.7
1848 Female, age 42, unknown 110.1
1890 Male, age 53, unknown 107.9
2097 Female, age 72, unknown 102.6
Median raphe nucleus
nTPM: 122.9
2220 Male, age 76, midline 122.9
Pedunculopontine tegmental nucleus
nTPM: 112.3
2334 Male, age 80, both hemispheres 117.0
2338 Male, age 61, both hemispheres 113.2
1921 Female, age 85, both hemispheres 106.7
Periaquaductal grey, anterior
nTPM: 105.4
2502 Female, age 75, unknown 107.2
1795 Male, age 51, unknown 104.5
1947 Male, age 18, unknown 104.5
Periaquaductal grey, dorsal
nTPM: 112.3
2850 Male, age 76, both hemispheres 123.6
2464 Female, age 72, unknown 111.6
1840 Male, age 53, unknown 108.6
1831 Male, age 72, unknown 105.5
Periaquaductal grey, lateral
nTPM: 105.0
2140 Male, age 76, both hemispheres 112.0
2053 Male, age 18, unknown 103.2
2272 Male, age 74, both hemispheres 100.0
Pretectal area
nTPM: 105.9
2825 Male, age 18, unknown 112.3
2407 Male, age 75, both hemispheres 109.9
1815 Male, age 53, unknown 107.7
1816 Male, age 51, unknown 106.8
1817 Female, age 42, unknown 106.6
2007 Male, age 72, unknown 106.1
1944 Female, age 72, unknown 105.6
2224 Female, age 72, unknown 105.6
2667 Female, age 75, unknown 104.0
2316 Male, age 76, right hemisphere 102.5
2273 Male, age 74, both hemispheres 98.4
Red nucleus
nTPM: 113.0
2503 Female, age 72, unknown 121.7
2725 Female, age 75, unknown 121.4
2588 Male, age 74, left hemisphere 119.0
1954 Female, age 42, unknown 113.8
1865 Male, age 51, unknown 113.4
2227 Male, age 72, unknown 112.4
2769 Male, age 72, unknown 112.0
1904 Male, age 53, unknown 111.1
2823 Male, age 76, right hemisphere 109.3
2785 Male, age 18, unknown 108.2
1821 Female, age 72, unknown 107.5
2584 Male, age 75, left hemisphere 106.9
Substantia nigra
nTPM: 107.0
2699 Male, age 18, unknown 117.3
1941 Male, age 53, unknown 110.8
1916 Female, age 42, unknown 108.4
2409 Female, age 72, unknown 108.0
1889 Female, age 72, unknown 107.6
1851 Male, age 51, unknown 105.6
2665 Male, age 74, both hemispheres 105.3
2241 Male, age 72, unknown 102.9
2583 Male, age 75, right hemisphere 102.0
2590 Female, age 75, unknown 102.0
Superior colliculus
nTPM: 105.7
1895 Male, age 76, right hemisphere 108.6
2587 Male, age 74, left hemisphere 107.7
1839 Male, age 51, unknown 107.6
1913 Female, age 42, unknown 106.2
2087 Female, age 72, unknown 105.3
1796 Male, age 53, unknown 105.2
2668 Female, age 75, unknown 104.6
1995 Male, age 72, unknown 104.3
2664 Male, age 75, both hemispheres 103.9
2261 Male, age 18, unknown 103.6
Ventral tegmental area
nTPM: 109.0
2223 Female, age 72, unknown 114.5
2218 Male, age 76, both hemispheres 113.5
1915 Female, age 42, unknown 109.3
1942 Male, age 51, unknown 107.9
2021 Male, age 53, unknown 104.8
2410 Female, age 72, unknown 104.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 198.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 198.5
Samples: 139

Max nTPM: 474.2
Min nTPM: 111.2
Std nTPM: 62.5
Median nTPM: 185.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 474.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 408.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 369.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 347.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 344.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 328.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 319.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 313.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 302.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 298.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 290.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.0
FF:10158-103A5 76 years, female 137.0

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The Human Protein Atlas

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