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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:492.3 nTPM
HPA:492.3 nTPM
GTEx:1121.3 nTPM
FANTOM5:278.4 Scaled Tags Per Million
Pig:53.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 492.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 457.8
1981 Female, age 72, midline 485.4
2565 Male, age 75, midline 472.9
2048 Male, age 55, midline 461.4
2816 Male, age 47, midline 437.2
2194 Female, age 79, both hemispheres 432.2
Cervical spinal cord, dorsal horn
nTPM: 464.6
2173 Female, age 72, unknown 507.2
2069 Male, age 47, both hemispheres 485.7
2296 Male, age 66, both hemispheres 480.5
1877 Male, age 55, unknown 461.7
2721 Male, age 90, both hemispheres 427.8
2297 Male, age 75, both hemispheres 424.7
Cervical spinal cord, ventral horn
nTPM: 492.3
2480 Male, age 75, both hemispheres 544.9
2809 Male, age 90, both hemispheres 522.6
2098 Female, age 72, unknown 519.0
2295 Male, age 66, both hemispheres 486.2
2068 Male, age 55, unknown 466.0
2820 Female, age 79, both hemispheres 415.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1121.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1121.3
Samples: 159

Max nTPM: 2094.4
Min nTPM: 520.8
Std nTPM: 315.7
Median nTPM: 1102.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 2094.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1946.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1914.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1858.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1739.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1739.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1735.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1720.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1696.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1688.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1650.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1643.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1624.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1608.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1606.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 1604.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1587.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1581.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1579.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1556.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1536.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1532.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1510.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1498.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1481.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1450.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1417.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1409.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1392.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1377.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1374.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1368.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1363.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1361.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1347.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1347.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1330.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1326.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1325.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1311.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1286.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1280.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1269.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1260.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1255.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1252.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1250.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 1247.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1238.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 1222.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1221.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1217.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1213.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1212.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1207.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1205.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 1205.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1197.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 1185.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1180.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1170.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1167.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1166.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1163.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1161.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1158.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1157.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1154.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1148.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1142.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1136.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1119.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1116.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1116.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1111.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1107.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1106.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1104.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1103.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 1102.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1088.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1073.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1073.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1073.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1065.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1065.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1058.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1048.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 1047.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1038.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1037.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 1036.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1034.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1030.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1029.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1018.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1015.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1010.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 999.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 994.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 992.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 988.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 980.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 976.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 970.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 968.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 961.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 960.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 954.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 952.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 926.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 905.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 904.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 893.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 890.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 888.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 878.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 877.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 863.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 860.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 859.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 854.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 840.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 839.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 835.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 834.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 830.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 827.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 819.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 817.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 814.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 805.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 802.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 799.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 799.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 798.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 789.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 786.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 783.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 782.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 779.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 774.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 768.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 766.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 763.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 754.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 754.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 734.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 732.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 718.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 673.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 670.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 668.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 629.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 608.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 598.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 530.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 522.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 520.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 278.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 278.4
FF:10181-103D1 60 years, female 291.1
FF:10159-103A6 76 years, female 265.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 53.0
Samples: 4

Max nTPM: 67.6
Min nTPM: 38.5
Sample A Female 43.4
Sample B Female 62.4
Sample C Male 67.6
Sample D Male 38.5
Ventral spinal cord
nTPM: 46.0
Samples: 4

Max nTPM: 49.3
Min nTPM: 41.7
Sample A Female 41.7
Sample B Female 47.5
Sample C Male 49.3
Sample D Male 45.5

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