We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NACA
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • NACA
BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:453.0 nTPM
GTEx:453.0 nTPM
FANTOM5:191.4 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:801.5 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 453.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 453.0
Samples: 105

Max nTPM: 716.2
Min nTPM: 304.3
Std nTPM: 80.0
Median nTPM:
491_1 89 years, female 716.2
35_1 74 years, female 661.2
162_1 79 years, female 602.1
137_1 83 years, male 593.2
466_1 57 years, female 588.1
495_1 57 years, female 586.1
308_1 70 years, female 561.7
145_1 84 years, male 561.3
315_1 62 years, female 554.4
379_1 60 years, male 552.6
126_1 63 years, male 552.3
384_1 83 years, male 551.9
321_1 62 years, female 548.8
142_1 61 years, female 548.3
237_1 82 years, male 543.2
139_1 64 years, female 541.9
375_1 74 years, female 541.7
307_1 66 years, female 536.8
2_1 77 years, female 529.8
447_1 81 years, male 529.2
229_1 69 years, female 529.1
117_1 61 years, male 526.8
17_1 71 years, male 520.5
217_1 76 years, male 517.7
41_1 94 years, female 516.7
452_1 88 years, female 514.6
396_1 62 years, male 512.4
311_1 78 years, male 512.1
376_1 75 years, female 503.2
288_1 66 years, female 500.9
518_1 75 years, female 491.1
109_1 81 years, female 486.4
501_1 88 years, male 483.5
119_1 70 years, female 483.4
4_1 88 years, female 483.1
89_1 63 years, male 482.6
389_1 86 years, female 482.2
153_1 70 years, female 479.4
490_1 67 years, female 477.5
120_1 70 years, female 476.3
348_1 84 years, male 474.5
322_1 76 years, male 472.5
266_1 85 years, male 470.1
377_1 82 years, female 469.7
6_1 73 years, female 469.1
355_1 70 years, female 468.8
246_1 77 years, male 468.3
415_1 77 years, female 467.4
316_1 62 years, male 466.4
414_1 84 years, female 459.3
394_1 75 years, female 458.8
499_1 55 years, female 455.6
413_1 59 years, female 453.8
218_1 71 years, female 449.1
173_1 67 years, male 444.4
42_1 85 years, male 443.7
335_1 73 years, female 440.7
81_1 67 years, male 435.7
189_1 76 years, male 435.1
468_1 89 years, male 432.6
386_1 76 years, male 429.3
405_1 91 years, male 428.5
320_1 89 years, female 425.1
43_1 64 years, female 421.5
317_1 60 years, male 421.5
314_1 67 years, male 418.7
526_1 61 years, male 417.3
115_1 83 years, male 416.3
291_1 76 years, male 414.4
149_1 88 years, male 413.8
9_1 66 years, female 411.1
347_1 72 years, male 410.8
351_1 91 years, male 406.1
404_1 82 years, female 405.2
319_1 81 years, male 400.9
265_1 87 years, male 399.6
99_1 64 years, male 399.3
18_1 88 years, male 397.7
503_1 68 years, male 397.7
295_1 61 years, female 395.4
32_1 67 years, male 394.4
318_1 68 years, male 389.7
254_1 77 years, female 389.4
292_1 71 years, male 388.5
264_1 73 years, female 385.4
324_1 76 years, male 383.2
243_1 75 years, male 375.8
177_1 74 years, male 371.2
251_1 78 years, male 363.2
313_1 79 years, female 360.4
480_1 63 years, male 359.0
517_1 88 years, male 357.5
506_1 65 years, male 355.3
286_1 68 years, female 352.9
353_1 82 years, female 349.5
354_1 81 years, female 347.5
349_1 83 years, male 340.0
406_1 79 years, male 334.6
352_1 62 years, male 330.3
163_1 78 years, male 324.9
350_1 84 years, female 322.6
172_1 72 years, female 322.1
293_1 68 years, female 314.2
425_1 59 years, female 306.3
356_1 87 years, female 304.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 191.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 191.4
FF:10030-101E3 24-65 years, mixed 191.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 28.4
Pig sample Sample description nTPM
Retina
nTPM: 28.4
Samples: 4

Max nTPM: 31.0
Min nTPM: 26.7
Sample A Female 28.4
Sample B Female 26.7
Sample C Male 31.0
Sample D Male 27.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 801.5
Mouse sample Sample description nTPM
Retina
nTPM: 801.5
Samples: 4

Max nTPM: 915.1
Min nTPM: 701.8
Sample A Male 833.0
Sample B Male 701.8
Sample C Female 915.1
Sample D Female 756.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.