BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA:11.9 nTPM
GTEx:20.3 nTPM
FANTOM5:120.3 Scaled Tags Per Million
Pig:1.9 nTPM
Mouse:17.7 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.7
2290 Female, age 72, unknown 15.8
1857 Female, age 85, left hemisphere 15.1
1854 Male, age 80, left hemisphere 13.9
2289 Male, age 61, right hemisphere 7.7
1781 Male, age 74, unknown 7.1
2846 Female, age 79, unknown 7.1
2288 Male, age 75, left hemisphere 6.3
2481 Female, age 94, left hemisphere 4.5
Claustrum
nTPM: 2.3
2196 Female, age 79, unknown 5.0
2568 Male, age 61, both hemispheres 2.5
2198 Male, age 80, both hemispheres 2.3
2284 Female, age 91, both hemispheres 2.3
2392 Female, age 94, both hemispheres 1.9
2645 Female, age 72, unknown 1.9
2491 Male, age 75, both hemispheres 1.7
1956 Male, age 74, unknown 1.4
2292 Female, age 85, both hemispheres 1.3
Globus pallidus, externus
nTPM: 2.2
1996 Male, age 80, right hemisphere 2.5
2646 Male, age 61, right hemisphere 2.5
2567 Female, age 72, unknown 2.1
2772 Female, age 79, unknown 2.0
2395 Male, age 75, both hemispheres 1.8
Globus pallidus, internus
nTPM: 2.1
2483 Female, age 94, right hemisphere 2.9
2287 Male, age 75, right hemisphere 2.3
2111 Female, age 85, right hemisphere 2.1
1818 Male, age 74, unknown 2.0
2037 Male, age 80, right hemisphere 1.8
2566 Female, age 72, unknown 1.8
2778 Female, age 91, both hemispheres 1.6
Nucleus accumbens
nTPM: 11.9
1856 Female, age 91, right hemisphere 18.4
1806 Female, age 85, left hemisphere 16.6
1783 Male, age 74, unknown 15.7
2824 Male, age 61, right hemisphere 15.1
2698 Female, age 72, unknown 12.3
2732 Male, age 80, right hemisphere 7.3
2286 Male, age 75, left hemisphere 6.7
2391 Female, age 94, left hemisphere 3.4
Nucleus basalis of Meynert
nTPM: 4.9
2393 Male, age 80, right hemisphere 9.2
2484 Female, age 94, left hemisphere 4.5
2569 Male, age 61, both hemispheres 3.1
2821 Male, age 75, both hemispheres 3.0
Nucleus of the diagonal band
nTPM: 2.3
1979 Male, age 74, unknown 4.3
1812 Female, age 91, both hemispheres 2.1
2195 Female, age 85, both hemispheres 1.8
2775 Male, age 80, right hemisphere 1.7
2029 Male, age 61, right hemisphere 1.5
Olfactory tubercle
nTPM: 2.0
2856 Male, age 75, right hemisphere 2.2
1846 Male, age 80, right hemisphere 2.1
2487 Female, age 94, left hemisphere 1.9
1998 Female, age 91, both hemispheres 1.6
Putamen
nTPM: 9.0
1838 Male, age 80, right hemisphere 16.7
1937 Female, age 91, right hemisphere 13.3
2466 Female, age 79, unknown 7.8
1829 Male, age 74, unknown 7.7
2489 Female, age 72, unknown 7.5
2647 Male, age 75, left hemisphere 5.7
2482 Female, age 94, left hemisphere 4.1
Septal nuclei
nTPM: 2.1
2199 Male, age 80, right hemisphere 2.6
2394 Male, age 61, left hemisphere 2.6
2059 Female, age 85, both hemispheres 2.4
2009 Female, age 91, both hemispheres 1.9
2629 Female, age 94, right hemisphere 1.8
1960 Male, age 74, unknown 1.7
2031 Female, age 72, unknown 1.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.9
Samples: 246

Max nTPM: 31.1
Min nTPM: 1.3
Std nTPM: 5.2
Median nTPM: 11.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 31.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 27.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 27.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 25.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 22.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 22.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 21.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 21.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 21.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 20.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 20.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 20.3
Samples: 246

Max nTPM: 50.4
Min nTPM: 0.6
Std nTPM: 10.1
Median nTPM: 21.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 50.4
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 43.9
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 42.7
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 41.2
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 41.1
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 39.0
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 38.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 38.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 38.0
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 37.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 37.0
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Brain - Putamen (basal ganglia)
Average nTPM: 10.1
Samples: 205

Max nTPM: 23.8
Min nTPM: 0.8
Std nTPM: 4.7
Median nTPM: 9.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 23.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 23.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 22.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 21.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 21.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 20.6
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 20.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 20.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 19.4
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 19.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 18.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 120.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 120.3
FF:10164-103B2 76 years, female 120.3
Globus pallidus
Scaled Tags Per Million: 19.1
FF:10175-103C4 60 years, female 29.2
FF:10161-103A8 76 years, female 9.0
Nucleus accumbens
Scaled Tags Per Million: 42.3
FF:10037-101F1 23-56 years, mixed 42.3
Putamen
Scaled Tags Per Million: 105.6
FF:10176-103C5 60 years, female 105.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.9
Pig sample Sample description nTPM
Caudate
nTPM: 1.0
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.9
Sample C Male 1.3
Sample D Male 1.4
Putamen
nTPM: 1.9
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.6
Sample A Female 1.8
Sample B Female 1.7
Sample C Male 2.3
Sample D Male 1.6
Septum
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.8
Sample C Male 0.8
Sample D Male 0.8
Ventral pallidum
nTPM: 1.0
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 1.6
Sample C Male 1.1
Sample D Male 0.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.7
Samples: 4

Max nTPM: 19.4
Min nTPM: 15.0
Sample A Male 19.4
Sample B Male 19.2
Sample C Female 17.3
Sample D Female 15.0
Septum
nTPM: 6.2
Samples: 4

Max nTPM: 8.8
Min nTPM: 5.1
Sample A Male 8.8
Sample B Male 5.2
Sample C Female 5.5
Sample D Female 5.1
Ventral forebrain
nTPM: 15.3
Samples: 4

Max nTPM: 17.8
Min nTPM: 14.0
Sample A Male 15.0
Sample B Male 14.0
Sample C Female 14.4
Sample D Female 17.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
77924474 Antisense, RP_070219_02_A09, Mouse strain C57BL/6J (56 days, male) 2.2
70795937 Antisense, RP_050712_02_C04, Mouse strain C57BL/6J (56 days, male) 0.6
81655550 Antisense, RP_090303_03_E07, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.4
77924474 Antisense, RP_070219_02_A09, Mouse strain C57BL/6J (56 days, male) 0.7
70795937 Antisense, RP_050712_02_C04, Mouse strain C57BL/6J (56 days, male) 0.4
81655550 Antisense, RP_090303_03_E07, Mouse strain C57BL/6J (56 days, male) 0.1

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