MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.4 nTPM
HPA:59.4 nTPM
GTEx:48.5 nTPM
FANTOM5:143.8 Scaled Tags Per Million
Pig:46.1 nTPM
Mouse:43.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.1
1830 Male, age 51, unknown 60.6
2411 Female, age 72, unknown 57.3
2019 Male, age 18, unknown 57.2
1833 Male, age 53, unknown 53.8
1870 Female, age 42, unknown 52.9
2586 Male, age 75, left hemisphere 45.9
2828 Female, age 72, unknown 42.7
2666 Male, age 74, left hemisphere 41.8
2219 Male, age 76, both hemispheres 35.1
1827 Male, age 72, unknown 34.0
Dorsal raphe nucleus
nTPM: 35.6
2750 Male, age 76, both hemispheres 57.6
1828 Male, age 53, unknown 36.2
2016 Female, age 72, unknown 33.6
2047 Male, age 72, unknown 29.1
2298 Female, age 72, unknown 21.6
Inferior colliculus
nTPM: 32.4
1890 Male, age 53, unknown 40.1
1848 Female, age 42, unknown 32.9
2849 Male, age 72, unknown 30.1
2097 Female, age 72, unknown 26.6
Median raphe nucleus
nTPM: 33.2
2220 Male, age 76, midline 33.2
Pedunculopontine tegmental nucleus
nTPM: 40.9
2338 Male, age 61, both hemispheres 43.6
2334 Male, age 80, both hemispheres 42.8
1921 Female, age 85, both hemispheres 36.5
Periaquaductal grey, anterior
nTPM: 30.3
2502 Female, age 75, unknown 33.5
1947 Male, age 18, unknown 30.1
1795 Male, age 51, unknown 27.2
Periaquaductal grey, dorsal
nTPM: 25.3
2464 Female, age 72, unknown 34.0
1831 Male, age 72, unknown 28.3
2850 Male, age 76, both hemispheres 21.3
1840 Male, age 53, unknown 17.4
Periaquaductal grey, lateral
nTPM: 29.1
2053 Male, age 18, unknown 33.2
2272 Male, age 74, both hemispheres 30.9
2140 Male, age 76, both hemispheres 23.1
Pretectal area
nTPM: 31.9
2407 Male, age 75, both hemispheres 44.2
2316 Male, age 76, right hemisphere 41.9
1815 Male, age 53, unknown 39.1
2825 Male, age 18, unknown 34.1
2007 Male, age 72, unknown 32.2
1817 Female, age 42, unknown 29.4
2273 Male, age 74, both hemispheres 29.4
2667 Female, age 75, unknown 29.3
2224 Female, age 72, unknown 26.3
1944 Female, age 72, unknown 23.5
1816 Male, age 51, unknown 21.3
Red nucleus
nTPM: 59.4
1865 Male, age 51, unknown 69.6
2823 Male, age 76, right hemisphere 66.9
1904 Male, age 53, unknown 66.1
2769 Male, age 72, unknown 63.1
2227 Male, age 72, unknown 61.9
2785 Male, age 18, unknown 61.9
2588 Male, age 74, left hemisphere 61.4
1821 Female, age 72, unknown 57.8
2503 Female, age 72, unknown 56.4
2584 Male, age 75, left hemisphere 54.4
1954 Female, age 42, unknown 52.7
2725 Female, age 75, unknown 40.0
Substantia nigra
nTPM: 38.6
2583 Male, age 75, right hemisphere 49.4
2409 Female, age 72, unknown 45.6
2590 Female, age 75, unknown 44.1
1851 Male, age 51, unknown 40.5
2699 Male, age 18, unknown 37.3
1889 Female, age 72, unknown 36.8
2241 Male, age 72, unknown 36.6
1941 Male, age 53, unknown 34.5
2665 Male, age 74, both hemispheres 31.2
1916 Female, age 42, unknown 29.6
Superior colliculus
nTPM: 39.3
1913 Female, age 42, unknown 57.1
1995 Male, age 72, unknown 50.8
2668 Female, age 75, unknown 46.6
1895 Male, age 76, right hemisphere 43.8
2587 Male, age 74, left hemisphere 42.6
1839 Male, age 51, unknown 37.8
2664 Male, age 75, both hemispheres 34.7
1796 Male, age 53, unknown 29.8
2087 Female, age 72, unknown 25.8
2261 Male, age 18, unknown 24.0
Ventral tegmental area
nTPM: 43.3
2223 Female, age 72, unknown 64.3
2410 Female, age 72, unknown 47.6
1942 Male, age 51, unknown 41.6
2021 Male, age 53, unknown 38.2
2218 Male, age 76, both hemispheres 36.2
1915 Female, age 42, unknown 32.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.5
Samples: 139

Max nTPM: 154.6
Min nTPM: 15.4
Std nTPM: 22.5
Median nTPM: 44.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 154.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 137.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 130.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 97.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 94.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 93.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 90.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 87.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 86.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 84.9
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 74.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.8
FF:10158-103A5 76 years, female 143.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.1
Pig sample Sample description nTPM
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 68.7
Min nTPM: 35.5
Sample A Female 68.7
Sample B Female 39.3
Sample C Male 40.8
Sample D Male 35.5
Periaqueductal gray
nTPM: 32.6
Samples: 3

Max nTPM: 33.4
Min nTPM: 31.7
Sample B Female 33.4
Sample C Male 31.7
Sample D Male 32.6
Substantia nigra
nTPM: 42.3
Samples: 4

Max nTPM: 48.8
Min nTPM: 31.9
Sample A Female 46.4
Sample B Female 31.9
Sample C Male 42.1
Sample D Male 48.8
Superior colliculi
nTPM: 37.5
Samples: 4

Max nTPM: 46.5
Min nTPM: 21.3
Sample A Female 40.4
Sample B Female 21.3
Sample C Male 41.8
Sample D Male 46.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.0
Samples: 4

Max nTPM: 45.4
Min nTPM: 40.8
Sample A Male 40.8
Sample B Male 41.2
Sample C Female 45.4
Sample D Female 44.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71493057 Antisense, RP_050913_02_A12, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.