BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:15.4 nTPM
HPA:15.4 nTPM
GTEx:17.4 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:4.1 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA007393Antibody CAB005076Antibody CAB017560
Glial cells Not detectedNot detectedNot detected
Neuronal cells -Not detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.2
2481 Female, age 94, left hemisphere 15.5
2288 Male, age 75, left hemisphere 14.8
2290 Female, age 72, unknown 14.4
2846 Female, age 79, unknown 14.3
1857 Female, age 85, left hemisphere 14.1
1854 Male, age 80, left hemisphere 13.9
2289 Male, age 61, right hemisphere 13.5
1781 Male, age 74, unknown 13.3
Claustrum
nTPM: 13.7
1956 Male, age 74, unknown 14.2
2196 Female, age 79, unknown 13.9
2292 Female, age 85, both hemispheres 13.7
2392 Female, age 94, both hemispheres 13.7
2491 Male, age 75, both hemispheres 13.7
2645 Female, age 72, unknown 13.7
2198 Male, age 80, both hemispheres 13.6
2568 Male, age 61, both hemispheres 13.4
2284 Female, age 91, both hemispheres 13.0
Globus pallidus, externus
nTPM: 15.1
1996 Male, age 80, right hemisphere 15.9
2772 Female, age 79, unknown 15.5
2646 Male, age 61, right hemisphere 15.1
2395 Male, age 75, both hemispheres 14.8
2567 Female, age 72, unknown 14.5
Globus pallidus, internus
nTPM: 15.4
2483 Female, age 94, right hemisphere 16.3
2778 Female, age 91, both hemispheres 15.6
2287 Male, age 75, right hemisphere 15.5
2037 Male, age 80, right hemisphere 15.4
2111 Female, age 85, right hemisphere 15.3
1818 Male, age 74, unknown 15.2
2566 Female, age 72, unknown 14.4
Nucleus accumbens
nTPM: 14.2
2391 Female, age 94, left hemisphere 15.4
2286 Male, age 75, left hemisphere 15.0
1806 Female, age 85, left hemisphere 14.5
2732 Male, age 80, right hemisphere 14.5
2698 Female, age 72, unknown 13.9
1783 Male, age 74, unknown 13.7
1856 Female, age 91, right hemisphere 13.5
2824 Male, age 61, right hemisphere 13.3
Nucleus basalis of Meynert
nTPM: 14.6
2569 Male, age 61, both hemispheres 15.4
2821 Male, age 75, both hemispheres 14.7
2484 Female, age 94, left hemisphere 14.4
2393 Male, age 80, right hemisphere 13.9
Nucleus of the diagonal band
nTPM: 13.7
1812 Female, age 91, both hemispheres 14.2
1979 Male, age 74, unknown 13.9
2775 Male, age 80, right hemisphere 13.8
2195 Female, age 85, both hemispheres 13.6
2029 Male, age 61, right hemisphere 13.1
Olfactory tubercle
nTPM: 13.4
1846 Male, age 80, right hemisphere 13.8
2856 Male, age 75, right hemisphere 13.4
2487 Female, age 94, left hemisphere 13.3
1998 Female, age 91, both hemispheres 13.1
Putamen
nTPM: 14.0
2482 Female, age 94, left hemisphere 14.9
1937 Female, age 91, right hemisphere 14.3
2489 Female, age 72, unknown 14.2
2647 Male, age 75, left hemisphere 14.1
1829 Male, age 74, unknown 13.9
2466 Female, age 79, unknown 13.7
1838 Male, age 80, right hemisphere 12.9
Septal nuclei
nTPM: 13.9
2199 Male, age 80, right hemisphere 14.4
1960 Male, age 74, unknown 14.2
2394 Male, age 61, left hemisphere 14.0
2031 Female, age 72, unknown 13.9
2059 Female, age 85, both hemispheres 13.8
2009 Female, age 91, both hemispheres 13.6
2629 Female, age 94, right hemisphere 13.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.2
Samples: 246

Max nTPM: 34.1
Min nTPM: 7.9
Std nTPM: 4.9
Median nTPM: 15.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 34.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 31.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 29.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 29.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 28.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 28.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 27.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 27.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 26.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 25.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 25.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.4
Samples: 246

Max nTPM: 36.5
Min nTPM: 5.7
Std nTPM: 4.8
Median nTPM: 11.9
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 36.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 28.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 28.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 26.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 26.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 25.7
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 24.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 23.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 23.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 23.8
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 23.5
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Brain - Putamen (basal ganglia)
Average nTPM: 17.4
Samples: 205

Max nTPM: 36.8
Min nTPM: 6.5
Std nTPM: 5.8
Median nTPM: 16.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 36.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 36.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 32.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 31.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 30.8
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 30.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 29.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 29.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 29.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 29.0
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 28.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 15.4
FF:10164-103B2 76 years, female 15.4
Globus pallidus
Scaled Tags Per Million: 15.8
FF:10161-103A8 76 years, female 20.5
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 8.5
FF:10037-101F1 23-56 years, mixed 8.5
Putamen
Scaled Tags Per Million: 7.3
FF:10176-103C5 60 years, female 7.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.2
Pig sample Sample description nTPM
Caudate
nTPM: 2.8
Samples: 4

Max nTPM: 3.1
Min nTPM: 2.2
Sample A Female 3.1
Sample B Female 2.7
Sample C Male 3.0
Sample D Male 2.2
Putamen
nTPM: 4.1
Samples: 4

Max nTPM: 5.6
Min nTPM: 2.5
Sample A Female 5.6
Sample B Female 2.5
Sample C Male 4.6
Sample D Male 3.5
Septum
nTPM: 4.2
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.3
Sample A Female 4.8
Sample B Female 3.3
Sample C Male 4.2
Sample D Male 4.3
Ventral pallidum
nTPM: 4.2
Samples: 4

Max nTPM: 5.9
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 4.1
Sample C Male 5.9
Sample D Male 4.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.5
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.8
Sample A Male 3.2
Sample B Male 1.8
Sample C Female 2.5
Sample D Female 2.5
Septum
nTPM: 4.1
Samples: 4

Max nTPM: 4.7
Min nTPM: 3.6
Sample A Male 3.6
Sample B Male 4.7
Sample C Female 4.2
Sample D Female 3.8
Ventral forebrain
nTPM: 3.9
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.3
Sample A Male 3.7
Sample B Male 3.4
Sample C Female 5.1
Sample D Female 3.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70436730 Antisense, RP_050310_01_C11, Mouse strain C57BL/6J (56 days, male) 0.0
69014548 Antisense, RP_050310_01_C11, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70436730 Antisense, RP_050310_01_C11, Mouse strain C57BL/6J (56 days, male) 0.0
69014548 Antisense, RP_050310_01_C11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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