BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:43.0 nTPM
HPA:43.0 nTPM
GTEx:48.7 nTPM
FANTOM5:39.2 Scaled Tags Per Million
Pig:10.6 nTPM
Mouse:31.9 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036122Antibody HPA036123
Glial cells LowNot detected
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.2
1857 Female, age 85, left hemisphere 44.0
2290 Female, age 72, unknown 42.6
1781 Male, age 74, unknown 42.0
2481 Female, age 94, left hemisphere 41.5
2846 Female, age 79, unknown 41.4
1854 Male, age 80, left hemisphere 41.1
2288 Male, age 75, left hemisphere 39.3
2289 Male, age 61, right hemisphere 38.2
Claustrum
nTPM: 39.6
2198 Male, age 80, both hemispheres 42.5
2491 Male, age 75, both hemispheres 42.0
2196 Female, age 79, unknown 40.0
1956 Male, age 74, unknown 39.9
2284 Female, age 91, both hemispheres 39.1
2392 Female, age 94, both hemispheres 38.9
2568 Male, age 61, both hemispheres 38.5
2645 Female, age 72, unknown 38.3
2292 Female, age 85, both hemispheres 37.1
Globus pallidus, externus
nTPM: 41.1
2772 Female, age 79, unknown 44.7
1996 Male, age 80, right hemisphere 42.1
2395 Male, age 75, both hemispheres 40.8
2646 Male, age 61, right hemisphere 40.1
2567 Female, age 72, unknown 37.9
Globus pallidus, internus
nTPM: 39.7
2483 Female, age 94, right hemisphere 43.3
2287 Male, age 75, right hemisphere 42.8
2778 Female, age 91, both hemispheres 40.4
1818 Male, age 74, unknown 39.3
2037 Male, age 80, right hemisphere 38.7
2566 Female, age 72, unknown 37.4
2111 Female, age 85, right hemisphere 35.9
Nucleus accumbens
nTPM: 41.5
1856 Female, age 91, right hemisphere 46.0
1806 Female, age 85, left hemisphere 43.7
1783 Male, age 74, unknown 43.6
2286 Male, age 75, left hemisphere 41.4
2824 Male, age 61, right hemisphere 40.8
2698 Female, age 72, unknown 40.3
2391 Female, age 94, left hemisphere 38.1
2732 Male, age 80, right hemisphere 38.0
Nucleus basalis of Meynert
nTPM: 39.5
2484 Female, age 94, left hemisphere 40.7
2569 Male, age 61, both hemispheres 40.4
2393 Male, age 80, right hemisphere 38.7
2821 Male, age 75, both hemispheres 38.0
Nucleus of the diagonal band
nTPM: 43.0
2775 Male, age 80, right hemisphere 47.1
1812 Female, age 91, both hemispheres 44.3
2195 Female, age 85, both hemispheres 42.6
1979 Male, age 74, unknown 40.5
2029 Male, age 61, right hemisphere 40.4
Olfactory tubercle
nTPM: 41.3
1846 Male, age 80, right hemisphere 43.6
1998 Female, age 91, both hemispheres 43.6
2487 Female, age 94, left hemisphere 39.3
2856 Male, age 75, right hemisphere 38.8
Putamen
nTPM: 40.6
2466 Female, age 79, unknown 42.9
1838 Male, age 80, right hemisphere 41.8
1937 Female, age 91, right hemisphere 41.7
2482 Female, age 94, left hemisphere 40.4
2647 Male, age 75, left hemisphere 40.0
1829 Male, age 74, unknown 38.8
2489 Female, age 72, unknown 38.4
Septal nuclei
nTPM: 40.8
1960 Male, age 74, unknown 47.3
2031 Female, age 72, unknown 45.1
2009 Female, age 91, both hemispheres 40.9
2059 Female, age 85, both hemispheres 40.4
2629 Female, age 94, right hemisphere 37.8
2199 Male, age 80, right hemisphere 37.3
2394 Male, age 61, left hemisphere 37.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 48.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 41.8
Samples: 246

Max nTPM: 101.8
Min nTPM: 15.4
Std nTPM: 12.7
Median nTPM: 39.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 101.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 92.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 84.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 79.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 78.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 76.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 76.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 75.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 73.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 70.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 69.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 48.7
Samples: 246

Max nTPM: 110.2
Min nTPM: 15.5
Std nTPM: 14.1
Median nTPM: 46.9
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 110.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 96.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 89.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 83.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 81.4
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 79.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 79.4
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 79.0
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 79.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 78.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 78.2
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Brain - Putamen (basal ganglia)
Average nTPM: 44.3
Samples: 205

Max nTPM: 85.2
Min nTPM: 22.4
Std nTPM: 11.5
Median nTPM: 42.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 85.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 79.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 77.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 77.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 75.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 71.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 70.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 68.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 67.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 67.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 64.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.8
FF:10164-103B2 76 years, female 27.8
Globus pallidus
Scaled Tags Per Million: 17.9
FF:10175-103C4 60 years, female 18.9
FF:10161-103A8 76 years, female 16.9
Nucleus accumbens
Scaled Tags Per Million: 32.8
FF:10037-101F1 23-56 years, mixed 32.8
Putamen
Scaled Tags Per Million: 39.2
FF:10176-103C5 60 years, female 39.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.6
Pig sample Sample description nTPM
Caudate
nTPM: 8.6
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 9.6
Sample C Male 10.2
Sample D Male 7.4
Putamen
nTPM: 10.6
Samples: 4

Max nTPM: 11.6
Min nTPM: 8.5
Sample A Female 11.6
Sample B Female 8.5
Sample C Male 11.5
Sample D Male 10.7
Septum
nTPM: 9.2
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.6
Sample A Female 11.1
Sample B Female 8.6
Sample C Male 8.6
Sample D Male 8.6
Ventral pallidum
nTPM: 8.4
Samples: 4

Max nTPM: 9.4
Min nTPM: 7.5
Sample A Female 8.3
Sample B Female 9.4
Sample C Male 7.5
Sample D Male 8.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 31.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 31.9
Samples: 4

Max nTPM: 34.5
Min nTPM: 29.4
Sample A Male 33.0
Sample B Male 34.5
Sample C Female 29.4
Sample D Female 30.8
Septum
nTPM: 29.1
Samples: 4

Max nTPM: 34.1
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 28.0
Sample C Female 34.1
Sample D Female 29.0
Ventral forebrain
nTPM: 31.2
Samples: 4

Max nTPM: 35.0
Min nTPM: 26.9
Sample A Male 29.8
Sample B Male 26.9
Sample C Female 32.9
Sample D Female 35.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70918808 Antisense, RP_050712_04_E09, Mouse strain C57BL/6J (56 days, male) 0.0
68444696 Antisense, RP_050111_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70918808 Antisense, RP_050712_04_E09, Mouse strain C57BL/6J (56 days, male) 0.0
68444696 Antisense, RP_050111_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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