MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.5 nTPM
HPA:64.5 nTPM
GTEx:69.0 nTPM
FANTOM5:79.4 Scaled Tags Per Million
Pig:80.4 nTPM
Mouse:112.6 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.2
2666 Male, age 74, left hemisphere 71.4
2586 Male, age 75, left hemisphere 70.0
1870 Female, age 42, unknown 67.2
2411 Female, age 72, unknown 62.7
1827 Male, age 72, unknown 62.2
1830 Male, age 51, unknown 61.1
1833 Male, age 53, unknown 60.0
2019 Male, age 18, unknown 59.3
2828 Female, age 72, unknown 58.7
2219 Male, age 76, both hemispheres 49.5
Dorsal raphe nucleus
nTPM: 60.1
2016 Female, age 72, unknown 64.2
2750 Male, age 76, both hemispheres 60.9
2047 Male, age 72, unknown 60.5
2298 Female, age 72, unknown 58.2
1828 Male, age 53, unknown 56.9
Inferior colliculus
nTPM: 55.9
1890 Male, age 53, unknown 58.3
2097 Female, age 72, unknown 57.3
1848 Female, age 42, unknown 56.6
2849 Male, age 72, unknown 51.5
Median raphe nucleus
nTPM: 55.7
2220 Male, age 76, midline 55.7
Pedunculopontine tegmental nucleus
nTPM: 56.9
2334 Male, age 80, both hemispheres 60.1
2338 Male, age 61, both hemispheres 55.8
1921 Female, age 85, both hemispheres 54.8
Periaquaductal grey, anterior
nTPM: 62.2
1947 Male, age 18, unknown 65.6
2502 Female, age 75, unknown 61.4
1795 Male, age 51, unknown 59.5
Periaquaductal grey, dorsal
nTPM: 59.3
1831 Male, age 72, unknown 62.3
1840 Male, age 53, unknown 61.0
2464 Female, age 72, unknown 58.9
2850 Male, age 76, both hemispheres 55.1
Periaquaductal grey, lateral
nTPM: 55.7
2053 Male, age 18, unknown 62.9
2140 Male, age 76, both hemispheres 52.8
2272 Male, age 74, both hemispheres 51.5
Pretectal area
nTPM: 59.5
1815 Male, age 53, unknown 65.9
1816 Male, age 51, unknown 63.7
2407 Male, age 75, both hemispheres 61.9
2007 Male, age 72, unknown 61.6
1944 Female, age 72, unknown 61.5
1817 Female, age 42, unknown 60.5
2825 Male, age 18, unknown 58.9
2224 Female, age 72, unknown 57.2
2273 Male, age 74, both hemispheres 54.9
2667 Female, age 75, unknown 54.7
2316 Male, age 76, right hemisphere 53.5
Red nucleus
nTPM: 64.4
2503 Female, age 72, unknown 73.5
2588 Male, age 74, left hemisphere 70.8
1821 Female, age 72, unknown 68.3
2584 Male, age 75, left hemisphere 66.3
1904 Male, age 53, unknown 65.6
1865 Male, age 51, unknown 64.9
1954 Female, age 42, unknown 64.7
2725 Female, age 75, unknown 61.7
2227 Male, age 72, unknown 60.9
2785 Male, age 18, unknown 59.8
2769 Male, age 72, unknown 59.4
2823 Male, age 76, right hemisphere 57.2
Substantia nigra
nTPM: 64.5
2583 Male, age 75, right hemisphere 73.0
2241 Male, age 72, unknown 69.5
2665 Male, age 74, both hemispheres 69.4
1851 Male, age 51, unknown 65.3
1889 Female, age 72, unknown 64.1
2590 Female, age 75, unknown 63.3
2409 Female, age 72, unknown 62.0
1941 Male, age 53, unknown 59.6
1916 Female, age 42, unknown 59.5
2699 Male, age 18, unknown 59.4
Superior colliculus
nTPM: 62.8
2668 Female, age 75, unknown 72.9
2664 Male, age 75, both hemispheres 66.2
1913 Female, age 42, unknown 65.2
2587 Male, age 74, left hemisphere 65.0
1995 Male, age 72, unknown 64.8
2261 Male, age 18, unknown 62.7
2087 Female, age 72, unknown 60.9
1796 Male, age 53, unknown 59.7
1839 Male, age 51, unknown 59.1
1895 Male, age 76, right hemisphere 51.3
Ventral tegmental area
nTPM: 61.9
2223 Female, age 72, unknown 73.1
1942 Male, age 51, unknown 62.0
2021 Male, age 53, unknown 61.5
2410 Female, age 72, unknown 61.2
1915 Female, age 42, unknown 59.7
2218 Male, age 76, both hemispheres 54.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.0
Samples: 139

Max nTPM: 158.3
Min nTPM: 31.1
Std nTPM: 29.1
Median nTPM: 61.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 158.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 154.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 150.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 142.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 139.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 138.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 137.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 136.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 130.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 128.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 125.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.4
FF:10158-103A5 76 years, female 79.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 80.4
Pig sample Sample description nTPM
Midbrain
nTPM: 80.4
Samples: 4

Max nTPM: 103.5
Min nTPM: 60.2
Sample A Female 103.5
Sample B Female 89.8
Sample C Male 67.9
Sample D Male 60.2
Periaqueductal gray
nTPM: 62.2
Samples: 3

Max nTPM: 65.9
Min nTPM: 58.8
Sample B Female 65.9
Sample C Male 61.8
Sample D Male 58.8
Substantia nigra
nTPM: 72.9
Samples: 4

Max nTPM: 90.6
Min nTPM: 61.5
Sample A Female 90.6
Sample B Female 61.5
Sample C Male 69.6
Sample D Male 69.7
Superior colliculi
nTPM: 63.4
Samples: 4

Max nTPM: 75.4
Min nTPM: 45.0
Sample A Female 75.4
Sample B Female 45.0
Sample C Male 65.8
Sample D Male 67.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 112.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.6
Samples: 4

Max nTPM: 113.9
Min nTPM: 109.4
Sample A Male 109.4
Sample B Male 113.9
Sample C Female 113.9
Sample D Female 113.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
1726 Antisense, RP_040526_02_F03, Mouse strain C57BL/6J (56 days, male) 5.8
1727 Antisense, RP_040526_02_F03, Mouse strain C57BL/6J (56 days, male) 5.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.