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PCBP2
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:665.2 nTPM
GTEx:665.2 nTPM
FANTOM5:693.5 Scaled Tags Per Million
Pig:193.8 nTPM
Mouse:1631.8 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 665.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 665.2
Samples: 105

Max nTPM: 1141.3
Min nTPM: 488.3
Std nTPM: 109.2
Median nTPM:
237_1 82 years, male 1141.3
218_1 71 years, female 1014.0
375_1 74 years, female 969.8
347_1 72 years, male 955.0
490_1 67 years, female 897.3
35_1 74 years, female 856.7
307_1 66 years, female 834.6
415_1 77 years, female 805.7
386_1 76 years, male 802.2
229_1 69 years, female 800.5
379_1 60 years, male 787.1
243_1 75 years, male 785.7
447_1 81 years, male 781.5
389_1 86 years, female 777.7
246_1 77 years, male 762.8
172_1 72 years, female 754.6
316_1 62 years, male 750.9
313_1 79 years, female 750.4
311_1 78 years, male 742.7
321_1 62 years, female 738.5
319_1 81 years, male 736.8
217_1 76 years, male 730.0
265_1 87 years, male 719.6
352_1 62 years, male 716.6
324_1 76 years, male 713.5
173_1 67 years, male 713.4
126_1 63 years, male 710.3
42_1 85 years, male 706.5
414_1 84 years, female 705.8
466_1 57 years, female 704.0
355_1 70 years, female 700.1
384_1 83 years, male 697.0
322_1 76 years, male 696.7
377_1 82 years, female 696.6
396_1 62 years, male 694.8
468_1 89 years, male 692.9
526_1 61 years, male 688.8
137_1 83 years, male 685.4
495_1 57 years, female 684.3
266_1 85 years, male 683.3
354_1 81 years, female 682.9
335_1 73 years, female 680.2
117_1 61 years, male 679.7
349_1 83 years, male 672.2
6_1 73 years, female 671.1
189_1 76 years, male 670.5
99_1 64 years, male 670.1
518_1 75 years, female 669.8
350_1 84 years, female 663.0
499_1 55 years, female 662.8
315_1 62 years, female 652.0
425_1 59 years, female 649.9
376_1 75 years, female 645.3
394_1 75 years, female 640.8
405_1 91 years, male 640.6
43_1 64 years, female 635.3
142_1 61 years, female 634.3
348_1 84 years, male 632.1
177_1 74 years, male 630.0
317_1 60 years, male 628.7
491_1 89 years, female 628.5
480_1 63 years, male 627.4
293_1 68 years, female 624.0
286_1 68 years, female 622.2
145_1 84 years, male 621.0
292_1 71 years, male 619.5
318_1 68 years, male 613.3
163_1 78 years, male 611.3
406_1 79 years, male 611.0
17_1 71 years, male 610.5
353_1 82 years, female 609.5
291_1 76 years, male 602.8
251_1 78 years, male 601.9
320_1 89 years, female 600.5
503_1 68 years, male 599.5
314_1 67 years, male 597.5
81_1 67 years, male 593.8
413_1 59 years, female 593.3
308_1 70 years, female 593.0
288_1 66 years, female 591.2
162_1 79 years, female 590.7
264_1 73 years, female 584.1
4_1 88 years, female 583.2
119_1 70 years, female 582.3
115_1 83 years, male 579.5
120_1 70 years, female 578.2
295_1 61 years, female 573.6
2_1 77 years, female 571.5
452_1 88 years, female 570.0
254_1 77 years, female 563.8
351_1 91 years, male 558.9
506_1 65 years, male 555.0
139_1 64 years, female 553.7
404_1 82 years, female 552.8
153_1 70 years, female 552.5
32_1 67 years, male 542.6
356_1 87 years, female 538.6
18_1 88 years, male 535.4
517_1 88 years, male 531.6
501_1 88 years, male 529.5
89_1 63 years, male 528.7
9_1 66 years, female 524.9
41_1 94 years, female 516.8
109_1 81 years, female 494.4
149_1 88 years, male 488.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 693.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 693.5
FF:10030-101E3 24-65 years, mixed 693.5

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 193.8
Pig sample Sample description nTPM
Retina
nTPM: 193.8
Samples: 4

Max nTPM: 209.9
Min nTPM: 177.7
Sample A Female 182.4
Sample B Female 205.2
Sample C Male 209.9
Sample D Male 177.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1631.8
Mouse sample Sample description nTPM
Retina
nTPM: 1631.8
Samples: 4

Max nTPM: 1692.8
Min nTPM: 1589.2
Sample A Male 1692.8
Sample B Male 1589.2
Sample C Female 1654.8
Sample D Female 1590.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.