MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:69.3 nTPM
HPA:69.3 nTPM
GTEx:68.8 nTPM
FANTOM5:91.6 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:6.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.9
1830 Male, age 51, unknown 70.1
2019 Male, age 18, unknown 68.9
2411 Female, age 72, unknown 67.9
1870 Female, age 42, unknown 65.4
1833 Male, age 53, unknown 64.2
2586 Male, age 75, left hemisphere 62.4
2828 Female, age 72, unknown 61.5
2666 Male, age 74, left hemisphere 61.1
1827 Male, age 72, unknown 60.6
2219 Male, age 76, both hemispheres 56.7
Dorsal raphe nucleus
nTPM: 65.1
2750 Male, age 76, both hemispheres 76.3
2047 Male, age 72, unknown 63.8
1828 Male, age 53, unknown 63.1
2016 Female, age 72, unknown 61.4
2298 Female, age 72, unknown 60.9
Inferior colliculus
nTPM: 56.7
1848 Female, age 42, unknown 59.2
2849 Male, age 72, unknown 57.3
1890 Male, age 53, unknown 56.9
2097 Female, age 72, unknown 53.7
Median raphe nucleus
nTPM: 64.5
2220 Male, age 76, midline 64.5
Pedunculopontine tegmental nucleus
nTPM: 62.7
2334 Male, age 80, both hemispheres 64.1
2338 Male, age 61, both hemispheres 63.0
1921 Female, age 85, both hemispheres 61.1
Periaquaductal grey, anterior
nTPM: 63.3
2502 Female, age 75, unknown 65.9
1795 Male, age 51, unknown 64.3
1947 Male, age 18, unknown 59.6
Periaquaductal grey, dorsal
nTPM: 61.1
2850 Male, age 76, both hemispheres 64.2
1831 Male, age 72, unknown 61.5
2464 Female, age 72, unknown 60.2
1840 Male, age 53, unknown 58.5
Periaquaductal grey, lateral
nTPM: 66.4
2272 Male, age 74, both hemispheres 69.2
2140 Male, age 76, both hemispheres 66.9
2053 Male, age 18, unknown 62.9
Pretectal area
nTPM: 60.0
2273 Male, age 74, both hemispheres 69.9
2316 Male, age 76, right hemisphere 66.6
2667 Female, age 75, unknown 63.2
2825 Male, age 18, unknown 61.0
2407 Male, age 75, both hemispheres 60.4
2224 Female, age 72, unknown 58.7
2007 Male, age 72, unknown 58.4
1944 Female, age 72, unknown 56.7
1815 Male, age 53, unknown 56.2
1817 Female, age 42, unknown 55.4
1816 Male, age 51, unknown 53.6
Red nucleus
nTPM: 69.3
2823 Male, age 76, right hemisphere 75.3
2769 Male, age 72, unknown 74.5
2227 Male, age 72, unknown 74.4
2588 Male, age 74, left hemisphere 74.3
2584 Male, age 75, left hemisphere 72.4
1865 Male, age 51, unknown 69.7
2785 Male, age 18, unknown 68.8
1904 Male, age 53, unknown 68.3
2503 Female, age 72, unknown 65.5
2725 Female, age 75, unknown 64.5
1821 Female, age 72, unknown 63.0
1954 Female, age 42, unknown 61.3
Substantia nigra
nTPM: 59.9
1941 Male, age 53, unknown 66.6
2583 Male, age 75, right hemisphere 63.2
2590 Female, age 75, unknown 61.3
2699 Male, age 18, unknown 61.2
1851 Male, age 51, unknown 60.5
2409 Female, age 72, unknown 59.2
1916 Female, age 42, unknown 58.8
1889 Female, age 72, unknown 58.5
2665 Male, age 74, both hemispheres 55.8
2241 Male, age 72, unknown 54.0
Superior colliculus
nTPM: 61.1
1913 Female, age 42, unknown 65.4
1995 Male, age 72, unknown 64.0
2587 Male, age 74, left hemisphere 62.8
1839 Male, age 51, unknown 62.2
1796 Male, age 53, unknown 61.1
2261 Male, age 18, unknown 60.0
2664 Male, age 75, both hemispheres 59.5
1895 Male, age 76, right hemisphere 59.3
2087 Female, age 72, unknown 59.0
2668 Female, age 75, unknown 57.2
Ventral tegmental area
nTPM: 65.5
2223 Female, age 72, unknown 79.7
2021 Male, age 53, unknown 66.1
2218 Male, age 76, both hemispheres 63.3
1942 Male, age 51, unknown 63.1
2410 Female, age 72, unknown 62.6
1915 Female, age 42, unknown 58.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.8
Samples: 139

Max nTPM: 299.1
Min nTPM: 25.0
Std nTPM: 31.2
Median nTPM: 64.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 299.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 183.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 135.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 126.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 121.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 120.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 112.0
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 110.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 107.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 107.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 104.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.6
FF:10158-103A5 76 years, female 91.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.2
Pig sample Sample description nTPM
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 17.5
Min nTPM: 11.9
Sample A Female 17.5
Sample B Female 13.1
Sample C Male 12.5
Sample D Male 11.9
Periaqueductal gray
nTPM: 17.9
Samples: 3

Max nTPM: 18.5
Min nTPM: 17.6
Sample B Female 17.6
Sample C Male 17.6
Sample D Male 18.5
Substantia nigra
nTPM: 16.0
Samples: 4

Max nTPM: 20.6
Min nTPM: 10.9
Sample A Female 15.0
Sample B Female 20.6
Sample C Male 10.9
Sample D Male 17.4
Superior colliculi
nTPM: 18.2
Samples: 4

Max nTPM: 32.2
Min nTPM: 10.6
Sample A Female 15.1
Sample B Female 32.2
Sample C Male 10.6
Sample D Male 14.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.3
Sample A Male 7.0
Sample B Male 6.8
Sample C Female 6.3
Sample D Female 6.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
78534484 Antisense, RP_070620_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.