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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: High
Goblet cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:418.0 nTPM
HPA:418.0 nTPM
GTEx:129.9 nTPM
FANTOM5:2129.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA007162Antibody CAB035986Antibody CAB062546
Endocrine cells --High
Enterocytes --High
Enterocytes - Microvilli --High
Glandular cells HighHigh-
Goblet cells --High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 418.0
overview
Male, age 65
Small intestine sample 232
nTPM: 497.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 290.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 387.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 496.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 129.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 129.9
Samples: 187

Max nTPM: 778.2
Min nTPM: 4.0
Std nTPM: 137.9
Median nTPM: 71.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 778.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 502.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 498.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 469.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 462.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 434.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 422.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 420.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 409.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 403.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 400.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 380.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 380.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 373.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 368.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 365.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 362.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 358.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 354.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 354.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 348.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 347.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 338.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 322.2
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 300.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 296.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 291.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 281.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 281.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 279.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 279.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 263.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 252.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 251.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 244.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 243.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 237.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 236.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 234.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 231.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 230.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 218.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 218.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 217.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 214.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 211.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 206.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 203.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 197.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 197.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 196.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 195.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 194.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 192.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 183.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 181.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 171.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 169.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 167.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 163.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 162.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 162.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 162.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 162.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 161.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 159.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 155.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 137.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 137.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 133.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 129.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 128.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 125.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 119.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 117.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 112.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 111.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 107.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 107.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 107.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 105.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 105.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 102.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 100.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 100.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 97.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 88.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 88.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 87.6
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 86.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 84.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 83.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 80.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 71.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 67.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 66.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 62.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 61.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 61.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 59.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 56.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 54.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 52.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 52.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 50.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 48.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 47.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 45.1
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 40.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 38.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 38.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 38.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 37.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 36.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 33.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 32.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 31.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 30.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 30.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 30.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 30.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 29.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 29.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 29.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 29.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 28.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 28.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 27.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 26.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 26.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 26.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 26.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 25.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 25.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 25.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 25.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 24.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 23.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 23.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 22.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 22.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 22.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 21.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 21.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 20.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 20.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 20.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 19.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 18.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 18.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 18.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 16.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 16.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 15.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 15.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 15.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 15.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 15.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 15.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 14.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 13.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 12.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 12.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 11.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 10.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 10.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 9.6
GTEX-1192X-2526-SM-59868 50-59 years, male 8.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 8.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 8.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 8.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 8.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 8.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 8.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 7.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 7.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 7.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 7.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 6.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 6.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 6.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 5.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 4.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 4.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 4.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 4.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2129.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2129.0
FF:10024-101D6 15,40,85 years, mixed 2129.0

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