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SERPINA1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:760.9 nTPM
HPA:760.9 nTPM
GTEx:666.0 nTPM
FANTOM5:3360.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA000927Antibody HPA001292Antibody CAB013211Antibody CAB016648Antibody CAB073396
Endocrine cells ----Not detected
Enterocytes ----Not detected
Enterocytes - Microvilli ----Not detected
Glandular cells Not detectedNot detectedMediumLow-
Goblet cells ----Not detected
Paneth cells ----Medium









SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 760.9
overview
Male, age 65
Small intestine sample 232
nTPM: 625.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 748.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 798.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 871.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 666.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 666.0
Samples: 187

Max nTPM: 5860.6
Min nTPM: 0.5
Std nTPM: 933.6
Median nTPM: 248.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 5860.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 5060.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 4087.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 3305.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 3234.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 3091.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 2984.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 2983.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2894.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2796.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2391.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 2184.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2132.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 2098.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1992.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1964.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1929.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1807.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1771.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1768.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1695.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1592.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1577.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 1477.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1463.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1436.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1400.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1389.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1382.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1332.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1304.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1275.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1272.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1266.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1241.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 1240.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1158.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1119.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1072.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1071.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1034.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1014.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 997.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 994.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 986.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 979.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 946.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 945.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 919.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 906.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 898.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 893.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 889.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 869.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 864.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 852.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 843.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 838.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 833.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 814.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 814.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 812.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 727.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 726.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 714.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 700.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 684.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 676.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 673.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 626.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 625.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 606.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 602.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 553.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 539.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 532.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 519.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 509.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 487.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 487.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 471.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 455.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 406.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 385.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 382.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 382.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 380.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 323.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 320.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 290.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 268.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 267.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 263.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 248.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 236.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 235.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 229.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 209.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 197.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 169.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 169.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 154.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 150.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 147.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 147.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 138.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 133.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 125.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 123.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 121.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 119.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 118.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 103.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 103.1
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 95.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 93.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 93.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 92.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 84.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 82.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 82.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 73.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 68.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 67.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 67.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 67.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 64.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 61.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 57.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 51.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 49.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 48.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 48.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 48.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 47.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 47.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 45.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 44.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 40.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 40.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 39.8
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 38.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 37.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 35.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 35.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 33.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 32.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 30.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 26.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 26.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 25.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 25.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 25.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 22.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 22.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 21.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 21.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 20.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 20.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 19.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 19.3
GTEX-1192X-2526-SM-59868 50-59 years, male 16.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 16.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 15.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 15.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 15.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 14.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 14.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 14.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 14.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 14.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 13.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 13.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 12.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 11.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 11.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 8.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 8.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 7.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 7.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 5.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 4.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 3.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 3.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 2.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3360.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3360.1
FF:10024-101D6 15,40,85 years, mixed 3360.1

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