BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:5.0 nTPM
HPA:5.0 nTPM
GTEx:4.7 nTPM
FANTOM5:21.7 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:16.2 nTPM
Allen mouse:0.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 3.9
2288 Male, age 75, left hemisphere 4.9
2481 Female, age 94, left hemisphere 4.1
1854 Male, age 80, left hemisphere 4.0
1781 Male, age 74, unknown 3.7
1857 Female, age 85, left hemisphere 3.7
2290 Female, age 72, unknown 3.7
2846 Female, age 79, unknown 3.6
2289 Male, age 61, right hemisphere 3.3
Claustrum
nTPM: 4.1
2284 Female, age 91, both hemispheres 4.6
2491 Male, age 75, both hemispheres 4.6
2568 Male, age 61, both hemispheres 4.5
2645 Female, age 72, unknown 4.3
2198 Male, age 80, both hemispheres 4.2
1956 Male, age 74, unknown 4.1
2392 Female, age 94, both hemispheres 3.9
2292 Female, age 85, both hemispheres 3.6
2196 Female, age 79, unknown 3.0
Globus pallidus, externus
nTPM: 4.3
2772 Female, age 79, unknown 4.6
1996 Male, age 80, right hemisphere 4.3
2567 Female, age 72, unknown 4.2
2646 Male, age 61, right hemisphere 4.2
2395 Male, age 75, both hemispheres 4.1
Globus pallidus, internus
nTPM: 4.5
1818 Male, age 74, unknown 4.9
2287 Male, age 75, right hemisphere 4.8
2037 Male, age 80, right hemisphere 4.5
2483 Female, age 94, right hemisphere 4.5
2111 Female, age 85, right hemisphere 4.4
2778 Female, age 91, both hemispheres 4.4
2566 Female, age 72, unknown 3.8
Nucleus accumbens
nTPM: 4.0
2286 Male, age 75, left hemisphere 5.0
2824 Male, age 61, right hemisphere 4.5
1856 Female, age 91, right hemisphere 4.2
1783 Male, age 74, unknown 4.1
2391 Female, age 94, left hemisphere 3.9
2698 Female, age 72, unknown 3.5
2732 Male, age 80, right hemisphere 3.5
1806 Female, age 85, left hemisphere 3.3
Nucleus basalis of Meynert
nTPM: 3.8
2393 Male, age 80, right hemisphere 4.0
2569 Male, age 61, both hemispheres 4.0
2821 Male, age 75, both hemispheres 3.8
2484 Female, age 94, left hemisphere 3.5
Nucleus of the diagonal band
nTPM: 5.0
2775 Male, age 80, right hemisphere 5.5
2029 Male, age 61, right hemisphere 5.2
1812 Female, age 91, both hemispheres 4.8
2195 Female, age 85, both hemispheres 4.8
1979 Male, age 74, unknown 4.5
Olfactory tubercle
nTPM: 4.8
1846 Male, age 80, right hemisphere 5.3
1998 Female, age 91, both hemispheres 5.2
2856 Male, age 75, right hemisphere 4.8
2487 Female, age 94, left hemisphere 4.2
Putamen
nTPM: 4.0
1838 Male, age 80, right hemisphere 4.4
2647 Male, age 75, left hemisphere 4.4
1829 Male, age 74, unknown 3.9
2466 Female, age 79, unknown 3.9
2482 Female, age 94, left hemisphere 3.9
1937 Female, age 91, right hemisphere 3.8
2489 Female, age 72, unknown 3.7
Septal nuclei
nTPM: 4.5
1960 Male, age 74, unknown 4.8
2031 Female, age 72, unknown 4.7
2394 Male, age 61, left hemisphere 4.7
2009 Female, age 91, both hemispheres 4.6
2629 Female, age 94, right hemisphere 4.4
2059 Female, age 85, both hemispheres 4.3
2199 Male, age 80, right hemisphere 4.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 4.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.7
Samples: 246

Max nTPM: 9.1
Min nTPM: 2.5
Std nTPM: 0.8
Median nTPM: 4.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 9.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 7.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 7.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 6.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 6.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 6.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 6.2
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 6.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 6.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 6.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 6.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 4.5
Samples: 246

Max nTPM: 7.7
Min nTPM: 2.0
Std nTPM: 0.8
Median nTPM: 4.5
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 7.7
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 6.7
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 6.4
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 6.4
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 6.2
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 6.1
GTEX-13O3Q-0011-R6a-SM-5KM2V 50-59 years, male 6.0
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 6.0
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 5.9
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 5.9
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 5.8
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Brain - Putamen (basal ganglia)
Average nTPM: 4.6
Samples: 205

Max nTPM: 6.9
Min nTPM: 2.7
Std nTPM: 0.7
Median nTPM: 4.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 6.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 6.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 6.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 6.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 6.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 6.2
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 6.1
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 6.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 6.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 5.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 5.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 20.8
FF:10164-103B2 76 years, female 20.8
Globus pallidus
Scaled Tags Per Million: 21.7
FF:10175-103C4 60 years, female 23.6
FF:10161-103A8 76 years, female 19.8
Nucleus accumbens
Scaled Tags Per Million: 18.6
FF:10037-101F1 23-56 years, mixed 18.6
Putamen
Scaled Tags Per Million: 21.7
FF:10176-103C5 60 years, female 21.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Caudate
nTPM: 9.8
Samples: 4

Max nTPM: 12.0
Min nTPM: 8.7
Sample A Female 8.7
Sample B Female 9.3
Sample C Male 12.0
Sample D Male 9.2
Putamen
nTPM: 11.6
Samples: 4

Max nTPM: 13.4
Min nTPM: 9.0
Sample A Female 12.1
Sample B Female 9.0
Sample C Male 13.4
Sample D Male 12.0
Septum
nTPM: 10.3
Samples: 4

Max nTPM: 13.2
Min nTPM: 9.0
Sample A Female 10.0
Sample B Female 9.0
Sample C Male 13.2
Sample D Male 9.1
Ventral pallidum
nTPM: 11.5
Samples: 4

Max nTPM: 16.1
Min nTPM: 9.7
Sample A Female 9.7
Sample B Female 10.1
Sample C Male 16.1
Sample D Male 9.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 16.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.5
Samples: 4

Max nTPM: 13.0
Min nTPM: 11.5
Sample A Male 12.8
Sample B Male 13.0
Sample C Female 12.7
Sample D Female 11.5
Septum
nTPM: 16.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 15.5
Sample A Male 15.5
Sample B Male 16.2
Sample C Female 17.1
Sample D Female 15.8
Ventral forebrain
nTPM: 14.9
Samples: 4

Max nTPM: 16.2
Min nTPM: 13.5
Sample A Male 13.5
Sample B Male 16.2
Sample C Female 14.4
Sample D Female 15.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
70238800 Antisense, RP_050526_04_A10, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.3
70238800 Antisense, RP_050526_04_A10, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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