MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:84.0 nTPM
HPA:84.0 nTPM
GTEx:67.0 nTPM
FANTOM5:95.3 Scaled Tags Per Million
Pig:15.6 nTPM
Mouse:31.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 84.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.3
1833 Male, age 53, unknown 82.5
2019 Male, age 18, unknown 81.8
1830 Male, age 51, unknown 79.0
2411 Female, age 72, unknown 78.9
2666 Male, age 74, left hemisphere 78.0
1870 Female, age 42, unknown 77.9
2828 Female, age 72, unknown 77.9
1827 Male, age 72, unknown 77.2
2219 Male, age 76, both hemispheres 76.6
2586 Male, age 75, left hemisphere 73.6
Dorsal raphe nucleus
nTPM: 81.5
2750 Male, age 76, both hemispheres 82.4
2047 Male, age 72, unknown 82.3
2298 Female, age 72, unknown 81.7
1828 Male, age 53, unknown 80.8
2016 Female, age 72, unknown 80.4
Inferior colliculus
nTPM: 76.0
1890 Male, age 53, unknown 78.6
1848 Female, age 42, unknown 76.1
2097 Female, age 72, unknown 75.9
2849 Male, age 72, unknown 73.5
Median raphe nucleus
nTPM: 79.2
2220 Male, age 76, midline 79.2
Pedunculopontine tegmental nucleus
nTPM: 81.1
2338 Male, age 61, both hemispheres 87.3
2334 Male, age 80, both hemispheres 79.6
1921 Female, age 85, both hemispheres 76.4
Periaquaductal grey, anterior
nTPM: 77.0
1947 Male, age 18, unknown 78.0
1795 Male, age 51, unknown 77.6
2502 Female, age 75, unknown 75.3
Periaquaductal grey, dorsal
nTPM: 77.5
2850 Male, age 76, both hemispheres 80.3
2464 Female, age 72, unknown 78.8
1831 Male, age 72, unknown 76.1
1840 Male, age 53, unknown 74.7
Periaquaductal grey, lateral
nTPM: 79.6
2272 Male, age 74, both hemispheres 89.0
2140 Male, age 76, both hemispheres 75.6
2053 Male, age 18, unknown 74.1
Pretectal area
nTPM: 78.3
2273 Male, age 74, both hemispheres 84.4
2667 Female, age 75, unknown 82.1
2224 Female, age 72, unknown 80.0
1817 Female, age 42, unknown 78.2
1944 Female, age 72, unknown 78.0
2007 Male, age 72, unknown 77.4
2407 Male, age 75, both hemispheres 76.8
2825 Male, age 18, unknown 76.8
1815 Male, age 53, unknown 76.7
2316 Male, age 76, right hemisphere 75.7
1816 Male, age 51, unknown 74.9
Red nucleus
nTPM: 80.8
2725 Female, age 75, unknown 85.3
2823 Male, age 76, right hemisphere 83.9
1904 Male, age 53, unknown 83.6
2785 Male, age 18, unknown 82.2
1865 Male, age 51, unknown 81.2
2227 Male, age 72, unknown 79.7
2769 Male, age 72, unknown 79.6
2584 Male, age 75, left hemisphere 79.0
2588 Male, age 74, left hemisphere 78.9
2503 Female, age 72, unknown 78.8
1821 Female, age 72, unknown 78.7
1954 Female, age 42, unknown 78.1
Substantia nigra
nTPM: 84.0
1851 Male, age 51, unknown 90.9
2241 Male, age 72, unknown 90.0
2699 Male, age 18, unknown 90.0
1916 Female, age 42, unknown 89.7
2409 Female, age 72, unknown 88.5
1941 Male, age 53, unknown 81.4
1889 Female, age 72, unknown 78.5
2590 Female, age 75, unknown 78.1
2665 Male, age 74, both hemispheres 76.4
2583 Male, age 75, right hemisphere 76.3
Superior colliculus
nTPM: 76.8
2587 Male, age 74, left hemisphere 81.8
1995 Male, age 72, unknown 78.9
1913 Female, age 42, unknown 78.5
1796 Male, age 53, unknown 78.1
1895 Male, age 76, right hemisphere 77.6
2087 Female, age 72, unknown 77.6
2668 Female, age 75, unknown 75.7
1839 Male, age 51, unknown 75.4
2261 Male, age 18, unknown 72.9
2664 Male, age 75, both hemispheres 71.7
Ventral tegmental area
nTPM: 82.4
2410 Female, age 72, unknown 87.3
1915 Female, age 42, unknown 85.5
2218 Male, age 76, both hemispheres 83.0
2223 Female, age 72, unknown 81.5
1942 Male, age 51, unknown 79.3
2021 Male, age 53, unknown 77.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 67.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.0
Samples: 139

Max nTPM: 93.4
Min nTPM: 43.4
Std nTPM: 9.6
Median nTPM: 66.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 93.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 90.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 90.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 87.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 84.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 84.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 83.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 83.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 82.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 81.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 80.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.3
FF:10158-103A5 76 years, female 95.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.6
Pig sample Sample description nTPM
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 19.8
Min nTPM: 12.0
Sample A Female 19.8
Sample B Female 14.9
Sample C Male 12.0
Sample D Male 14.6
Periaqueductal gray
nTPM: 15.6
Samples: 3

Max nTPM: 16.1
Min nTPM: 15.3
Sample B Female 15.3
Sample C Male 15.3
Sample D Male 16.1
Substantia nigra
nTPM: 15.1
Samples: 4

Max nTPM: 18.4
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 14.1
Sample C Male 14.0
Sample D Male 18.4
Superior colliculi
nTPM: 15.1
Samples: 4

Max nTPM: 16.1
Min nTPM: 14.3
Sample A Female 14.3
Sample B Female 16.1
Sample C Male 14.4
Sample D Male 15.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 35.2
Min nTPM: 29.7
Sample A Male 31.2
Sample B Male 31.0
Sample C Female 35.2
Sample D Female 29.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
72129245 Antisense, RP_051017_03_E05, Mouse strain C57BL/6J (56 days, male) 0.0
69015398 Antisense, RP_050310_02_H06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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