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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:188.4 nTPM
HPA:188.4 nTPM
GTEx:283.3 nTPM
FANTOM5:473.8 Scaled Tags Per Million
Pig:196.4 nTPM
Mouse:740.8 nTPM
Allen mouse:15.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 188.4
Sample id Sample description nTPM
Amygdala
nTPM: 135.4
1987 Female, age 91, left hemisphere 157.0
2814 Male, age 76, right hemisphere 156.7
2517 Female, age 94, left hemisphere 156.5
2514 Male, age 75, right hemisphere 116.9
2695 Female, age 67, right hemisphere 90.1
Basal amygdala
nTPM: 188.4
2685 Female, age 94, left hemisphere 225.7
2243 Female, age 91, right hemisphere 225.0
2827 Female, age 67, right hemisphere 209.7
2110 Male, age 80, left hemisphere 174.5
2609 Male, age 75, right hemisphere 149.5
1955 Male, age 76, both hemispheres 146.1
Central amygdala
nTPM: 179.8
2826 Female, age 94, left hemisphere 230.7
2239 Male, age 80, left hemisphere 191.0
2701 Female, age 91, right hemisphere 168.5
2515 Male, age 75, right hemisphere 155.1
1905 Male, age 76, both hemispheres 153.6
Corticomedial amygdala
nTPM: 183.5
2535 Female, age 67, right hemisphere 244.0
2242 Female, age 91, right hemisphere 222.5
2829 Male, age 80, left hemisphere 201.7
2429 Female, age 94, left hemisphere 172.8
2428 Male, age 75, right hemisphere 135.9
2240 Male, age 76, both hemispheres 124.0
Lateral amygdala
nTPM: 173.9
2534 Female, age 94, left hemisphere 245.6
2255 Female, age 91, right hemisphere 191.8
2256 Male, age 80, left hemisphere 169.9
1883 Male, age 76, both hemispheres 164.0
2830 Female, age 67, right hemisphere 161.9
2516 Male, age 75, right hemisphere 110.2
Stria terminalis, bed nucleus
nTPM: 184.3
1974 Female, age 91, both hemispheres 203.1
2486 Female, age 94, both hemispheres 197.6
2201 Male, age 74, unknown 152.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 283.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 283.3
Samples: 152

Max nTPM: 851.7
Min nTPM: 23.3
Std nTPM: 114.3
Median nTPM: 262.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 851.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 556.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 522.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 521.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 511.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 498.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 485.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 475.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 459.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 453.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 437.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 433.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 429.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 422.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 420.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 419.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 419.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 414.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 411.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 406.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 402.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 392.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 390.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 388.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 384.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 381.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 377.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 376.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 370.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 369.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 364.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 362.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 359.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 359.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 358.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 356.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 354.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 350.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 350.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 349.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 346.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 344.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 341.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 340.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 339.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 339.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 338.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 336.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 335.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 333.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 330.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 330.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 330.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 329.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 324.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 324.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 320.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 319.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 319.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 318.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 318.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 318.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 317.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 314.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 313.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 298.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 298.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 296.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 296.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 294.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 290.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 287.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 287.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 278.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 275.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 265.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 260.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 259.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 259.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 255.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 254.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 253.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 253.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 253.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 252.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 252.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 252.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 251.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 250.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 248.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 248.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 246.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 244.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 243.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 242.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 240.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 238.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 236.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 233.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 233.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 231.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 229.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 229.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 228.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 226.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 224.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 222.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 222.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 214.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 211.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 211.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 208.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 200.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 197.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 196.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 195.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 194.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 192.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 192.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 189.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 186.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 185.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 183.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 182.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 182.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 178.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 178.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 177.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 175.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 170.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 162.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 161.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 160.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 159.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 156.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 153.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 150.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 150.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 148.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 146.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 144.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 142.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 127.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 122.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 115.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 108.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 102.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 84.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 83.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 83.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 23.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 473.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 473.8
FF:10151-102I7 76 years, female 473.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 196.4
Pig sample Sample description nTPM
Amygdala
nTPM: 196.4
Samples: 4

Max nTPM: 298.3
Min nTPM: 147.0
Sample A Female 298.3
Sample B Female 147.0
Sample C Male 192.1
Sample D Male 148.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 740.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 740.8
Samples: 4

Max nTPM: 779.4
Min nTPM: 697.5
Sample A Male 767.7
Sample B Male 718.5
Sample C Female 779.4
Sample D Female 697.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.3
1004 Antisense, RP_Baylor_103022, Mouse strain C57BL/6J (56 days, male) 15.3

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