MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:158.1 nTPM
HPA:158.1 nTPM
GTEx:163.0 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:339.6 nTPM
Mouse:529.7 nTPM
Allen mouse:14.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 158.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 119.6
2586 Male, age 75, left hemisphere 151.3
2219 Male, age 76, both hemispheres 136.0
1827 Male, age 72, unknown 135.9
2828 Female, age 72, unknown 130.3
2666 Male, age 74, left hemisphere 122.4
2411 Female, age 72, unknown 118.7
2019 Male, age 18, unknown 117.0
1870 Female, age 42, unknown 98.4
1833 Male, age 53, unknown 94.2
1830 Male, age 51, unknown 92.1
Dorsal raphe nucleus
nTPM: 113.7
2298 Female, age 72, unknown 133.7
2047 Male, age 72, unknown 128.7
1828 Male, age 53, unknown 111.0
2750 Male, age 76, both hemispheres 109.4
2016 Female, age 72, unknown 85.6
Inferior colliculus
nTPM: 119.5
1848 Female, age 42, unknown 124.8
2097 Female, age 72, unknown 124.2
2849 Male, age 72, unknown 118.3
1890 Male, age 53, unknown 110.6
Median raphe nucleus
nTPM: 133.8
2220 Male, age 76, midline 133.8
Pedunculopontine tegmental nucleus
nTPM: 115.6
1921 Female, age 85, both hemispheres 141.0
2334 Male, age 80, both hemispheres 110.2
2338 Male, age 61, both hemispheres 95.6
Periaquaductal grey, anterior
nTPM: 158.1
2502 Female, age 75, unknown 199.9
1795 Male, age 51, unknown 142.5
1947 Male, age 18, unknown 131.9
Periaquaductal grey, dorsal
nTPM: 109.3
1840 Male, age 53, unknown 120.2
2464 Female, age 72, unknown 115.8
1831 Male, age 72, unknown 108.3
2850 Male, age 76, both hemispheres 92.7
Periaquaductal grey, lateral
nTPM: 87.6
2053 Male, age 18, unknown 96.3
2140 Male, age 76, both hemispheres 94.3
2272 Male, age 74, both hemispheres 72.2
Pretectal area
nTPM: 125.7
2007 Male, age 72, unknown 170.7
1816 Male, age 51, unknown 162.2
1944 Female, age 72, unknown 160.3
1817 Female, age 42, unknown 143.8
2667 Female, age 75, unknown 131.1
1815 Male, age 53, unknown 121.0
2825 Male, age 18, unknown 109.8
2224 Female, age 72, unknown 108.2
2407 Male, age 75, both hemispheres 100.9
2316 Male, age 76, right hemisphere 100.2
2273 Male, age 74, both hemispheres 74.5
Red nucleus
nTPM: 91.0
2785 Male, age 18, unknown 114.3
2584 Male, age 75, left hemisphere 111.1
2588 Male, age 74, left hemisphere 97.8
2769 Male, age 72, unknown 93.3
1821 Female, age 72, unknown 92.4
1954 Female, age 42, unknown 91.9
2227 Male, age 72, unknown 90.9
2503 Female, age 72, unknown 84.7
2725 Female, age 75, unknown 81.8
2823 Male, age 76, right hemisphere 81.2
1865 Male, age 51, unknown 76.7
1904 Male, age 53, unknown 76.2
Substantia nigra
nTPM: 123.3
1941 Male, age 53, unknown 187.3
2665 Male, age 74, both hemispheres 167.8
1916 Female, age 42, unknown 149.3
1889 Female, age 72, unknown 136.6
1851 Male, age 51, unknown 132.3
2699 Male, age 18, unknown 98.8
2590 Female, age 75, unknown 95.4
2241 Male, age 72, unknown 94.9
2409 Female, age 72, unknown 85.8
2583 Male, age 75, right hemisphere 85.3
Superior colliculus
nTPM: 117.2
2664 Male, age 75, both hemispheres 164.8
2087 Female, age 72, unknown 143.7
1796 Male, age 53, unknown 129.4
2261 Male, age 18, unknown 128.1
1895 Male, age 76, right hemisphere 122.7
1839 Male, age 51, unknown 115.8
2668 Female, age 75, unknown 113.7
2587 Male, age 74, left hemisphere 103.3
1995 Male, age 72, unknown 75.5
1913 Female, age 42, unknown 75.3
Ventral tegmental area
nTPM: 123.6
2218 Male, age 76, both hemispheres 149.7
1915 Female, age 42, unknown 137.8
1942 Male, age 51, unknown 133.9
2410 Female, age 72, unknown 122.0
2021 Male, age 53, unknown 101.3
2223 Female, age 72, unknown 96.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 163.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 163.0
Samples: 139

Max nTPM: 722.4
Min nTPM: 34.9
Std nTPM: 97.2
Median nTPM: 142.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 722.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 509.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 403.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 359.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 342.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 317.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 307.7
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 304.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 298.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 290.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 282.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.8
FF:10158-103A5 76 years, female 47.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 339.6
Pig sample Sample description nTPM
Midbrain
nTPM: 270.4
Samples: 4

Max nTPM: 436.4
Min nTPM: 103.5
Sample A Female 103.5
Sample B Female 228.3
Sample C Male 436.4
Sample D Male 313.4
Periaqueductal gray
nTPM: 212.8
Samples: 3

Max nTPM: 269.4
Min nTPM: 170.9
Sample B Female 198.1
Sample C Male 269.4
Sample D Male 170.9
Substantia nigra
nTPM: 237.2
Samples: 4

Max nTPM: 406.3
Min nTPM: 74.7
Sample A Female 406.3
Sample B Female 150.3
Sample C Male 317.6
Sample D Male 74.7
Superior colliculi
nTPM: 339.6
Samples: 4

Max nTPM: 490.6
Min nTPM: 167.2
Sample A Female 406.8
Sample B Female 167.2
Sample C Male 490.6
Sample D Male 293.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 529.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 529.8
Samples: 4

Max nTPM: 616.5
Min nTPM: 459.9
Sample A Male 616.5
Sample B Male 503.7
Sample C Female 459.9
Sample D Female 538.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.8
1004 Antisense, RP_Baylor_103022, Mouse strain C57BL/6J (56 days, male) 14.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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