MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:49.6 nTPM
HPA:49.6 nTPM
GTEx:61.6 nTPM
FANTOM5:268.0 Scaled Tags Per Million
Pig:186.4 nTPM
Mouse:163.4 nTPM
Allen mouse:16.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.6
2019 Male, age 18, unknown 66.4
2219 Male, age 76, both hemispheres 45.6
2828 Female, age 72, unknown 31.1
1827 Male, age 72, unknown 26.9
2586 Male, age 75, left hemisphere 21.7
2666 Male, age 74, left hemisphere 7.5
2411 Female, age 72, unknown 7.3
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
Dorsal raphe nucleus
nTPM: 27.1
2298 Female, age 72, unknown 49.8
1828 Male, age 53, unknown 40.2
2047 Male, age 72, unknown 37.0
2016 Female, age 72, unknown 8.7
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 28.7
2097 Female, age 72, unknown 40.2
1848 Female, age 42, unknown 36.5
1890 Male, age 53, unknown 19.7
2849 Male, age 72, unknown 18.4
Median raphe nucleus
nTPM: 1.7
2220 Male, age 76, midline 1.7
Pedunculopontine tegmental nucleus
nTPM: 8.1
1921 Female, age 85, both hemispheres 20.5
2334 Male, age 80, both hemispheres 3.9
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 37.0
1795 Male, age 51, unknown 43.0
2502 Female, age 75, unknown 41.8
1947 Male, age 18, unknown 26.2
Periaquaductal grey, dorsal
nTPM: 12.4
1840 Male, age 53, unknown 23.1
2464 Female, age 72, unknown 16.4
1831 Male, age 72, unknown 9.6
2850 Male, age 76, both hemispheres 0.4
Periaquaductal grey, lateral
nTPM: 10.3
2272 Male, age 74, both hemispheres 28.4
2140 Male, age 76, both hemispheres 2.4
2053 Male, age 18, unknown 0.0
Pretectal area
nTPM: 45.9
1816 Male, age 51, unknown 92.0
1944 Female, age 72, unknown 83.1
2007 Male, age 72, unknown 80.7
2273 Male, age 74, both hemispheres 66.2
1817 Female, age 42, unknown 64.0
2667 Female, age 75, unknown 35.7
1815 Male, age 53, unknown 30.0
2224 Female, age 72, unknown 28.4
2407 Male, age 75, both hemispheres 22.5
2316 Male, age 76, right hemisphere 1.8
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 7.4
2785 Male, age 18, unknown 55.3
2725 Female, age 75, unknown 24.1
2503 Female, age 72, unknown 6.3
2584 Male, age 75, left hemisphere 3.1
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2588 Male, age 74, left hemisphere 0.0
2769 Male, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 49.6
1941 Male, age 53, unknown 134.7
1916 Female, age 42, unknown 108.3
1851 Male, age 51, unknown 55.5
1889 Female, age 72, unknown 47.5
2665 Male, age 74, both hemispheres 44.7
2590 Female, age 75, unknown 34.8
2241 Male, age 72, unknown 28.7
2583 Male, age 75, right hemisphere 25.3
2699 Male, age 18, unknown 16.5
2409 Female, age 72, unknown 0.0
Superior colliculus
nTPM: 27.7
2664 Male, age 75, both hemispheres 61.4
2087 Female, age 72, unknown 59.9
1796 Male, age 53, unknown 37.6
2587 Male, age 74, left hemisphere 35.6
1895 Male, age 76, right hemisphere 33.2
2261 Male, age 18, unknown 23.8
2668 Female, age 75, unknown 9.6
1839 Male, age 51, unknown 9.5
1995 Male, age 72, unknown 6.5
1913 Female, age 42, unknown 0.0
Ventral tegmental area
nTPM: 27.9
1915 Female, age 42, unknown 55.5
2410 Female, age 72, unknown 39.7
2218 Male, age 76, both hemispheres 31.5
1942 Male, age 51, unknown 30.2
2021 Male, age 53, unknown 5.4
2223 Female, age 72, unknown 4.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.6
Samples: 139

Max nTPM: 287.3
Min nTPM: 23.6
Std nTPM: 31.4
Median nTPM: 53.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 287.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 203.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 137.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 130.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 123.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 117.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 116.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 112.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 103.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 102.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 101.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 268.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 268.0
FF:10158-103A5 76 years, female 268.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 186.4
Pig sample Sample description nTPM
Midbrain
nTPM: 163.2
Samples: 4

Max nTPM: 270.3
Min nTPM: 91.2
Sample A Female 91.2
Sample B Female 110.3
Sample C Male 270.3
Sample D Male 180.9
Periaqueductal gray
nTPM: 111.6
Samples: 3

Max nTPM: 139.2
Min nTPM: 87.4
Sample B Female 108.1
Sample C Male 139.2
Sample D Male 87.4
Substantia nigra
nTPM: 153.1
Samples: 4

Max nTPM: 203.6
Min nTPM: 79.7
Sample A Female 203.6
Sample B Female 125.8
Sample C Male 203.4
Sample D Male 79.7
Superior colliculi
nTPM: 186.4
Samples: 4

Max nTPM: 235.9
Min nTPM: 147.9
Sample A Female 182.6
Sample B Female 147.9
Sample C Male 235.9
Sample D Male 179.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 163.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 163.4
Samples: 4

Max nTPM: 184.4
Min nTPM: 133.9
Sample A Male 133.9
Sample B Male 170.1
Sample C Female 184.4
Sample D Female 165.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.4
70596059 Antisense, RP_050628_04_A03, Mouse strain C57BL/6J (56 days, male) 18.9
69885690 Antisense, RP_050512_03_C04, Mouse strain C57BL/6J (56 days, male) 13.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.