MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:3545.7 nTPM
HPA:3545.7 nTPM
GTEx:3114.9 nTPM
FANTOM5:528.5 Scaled Tags Per Million
Pig:46.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 3545.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3495.7
2666 Male, age 74, left hemisphere 3570.1
1870 Female, age 42, unknown 3554.8
2586 Male, age 75, left hemisphere 3526.0
2411 Female, age 72, unknown 3497.5
2828 Female, age 72, unknown 3483.1
1833 Male, age 53, unknown 3476.5
1827 Male, age 72, unknown 3471.2
1830 Male, age 51, unknown 3468.9
2219 Male, age 76, both hemispheres 3461.1
2019 Male, age 18, unknown 3448.1
Dorsal raphe nucleus
nTPM: 3464.2
2750 Male, age 76, both hemispheres 3497.1
2298 Female, age 72, unknown 3474.2
2016 Female, age 72, unknown 3458.6
1828 Male, age 53, unknown 3454.6
2047 Male, age 72, unknown 3436.7
Inferior colliculus
nTPM: 3468.9
1890 Male, age 53, unknown 3499.0
2849 Male, age 72, unknown 3486.0
1848 Female, age 42, unknown 3455.2
2097 Female, age 72, unknown 3435.6
Median raphe nucleus
nTPM: 3485.5
2220 Male, age 76, midline 3485.5
Pedunculopontine tegmental nucleus
nTPM: 3545.7
2338 Male, age 61, both hemispheres 3597.8
2334 Male, age 80, both hemispheres 3563.5
1921 Female, age 85, both hemispheres 3475.8
Periaquaductal grey, anterior
nTPM: 3461.8
2502 Female, age 75, unknown 3501.2
1795 Male, age 51, unknown 3444.1
1947 Male, age 18, unknown 3440.1
Periaquaductal grey, dorsal
nTPM: 3457.5
1840 Male, age 53, unknown 3506.1
2850 Male, age 76, both hemispheres 3456.5
1831 Male, age 72, unknown 3456.1
2464 Female, age 72, unknown 3411.5
Periaquaductal grey, lateral
nTPM: 3422.5
2053 Male, age 18, unknown 3456.0
2140 Male, age 76, both hemispheres 3448.9
2272 Male, age 74, both hemispheres 3362.6
Pretectal area
nTPM: 3454.6
2825 Male, age 18, unknown 3478.7
1817 Female, age 42, unknown 3475.8
2007 Male, age 72, unknown 3470.4
1815 Male, age 53, unknown 3468.9
1816 Male, age 51, unknown 3466.5
2316 Male, age 76, right hemisphere 3464.3
2224 Female, age 72, unknown 3461.4
2667 Female, age 75, unknown 3454.1
1944 Female, age 72, unknown 3453.7
2407 Male, age 75, both hemispheres 3437.7
2273 Male, age 74, both hemispheres 3368.9
Red nucleus
nTPM: 3530.4
2503 Female, age 72, unknown 3650.3
1904 Male, age 53, unknown 3557.9
1821 Female, age 72, unknown 3554.9
1865 Male, age 51, unknown 3543.7
2769 Male, age 72, unknown 3540.9
2227 Male, age 72, unknown 3527.3
2584 Male, age 75, left hemisphere 3525.6
2725 Female, age 75, unknown 3518.2
2588 Male, age 74, left hemisphere 3518.1
2785 Male, age 18, unknown 3495.7
1954 Female, age 42, unknown 3485.2
2823 Male, age 76, right hemisphere 3446.3
Substantia nigra
nTPM: 3531.0
2699 Male, age 18, unknown 3642.3
1851 Male, age 51, unknown 3612.5
2665 Male, age 74, both hemispheres 3589.5
2409 Female, age 72, unknown 3576.6
1916 Female, age 42, unknown 3547.0
1889 Female, age 72, unknown 3509.1
2241 Male, age 72, unknown 3492.1
2590 Female, age 75, unknown 3462.2
2583 Male, age 75, right hemisphere 3441.6
1941 Male, age 53, unknown 3437.5
Superior colliculus
nTPM: 3495.8
1913 Female, age 42, unknown 3566.9
2587 Male, age 74, left hemisphere 3561.0
1995 Male, age 72, unknown 3528.6
2668 Female, age 75, unknown 3521.0
1796 Male, age 53, unknown 3510.3
1895 Male, age 76, right hemisphere 3479.5
2664 Male, age 75, both hemispheres 3465.4
1839 Male, age 51, unknown 3455.7
2087 Female, age 72, unknown 3434.8
2261 Male, age 18, unknown 3434.6
Ventral tegmental area
nTPM: 3523.3
1915 Female, age 42, unknown 3598.7
2223 Female, age 72, unknown 3590.6
1942 Male, age 51, unknown 3500.8
2410 Female, age 72, unknown 3494.7
2021 Male, age 53, unknown 3491.0
2218 Male, age 76, both hemispheres 3464.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3114.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3114.9
Samples: 139

Max nTPM: 10242.8
Min nTPM: 938.7
Std nTPM: 1412.0
Median nTPM: 2771.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 10242.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 9232.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 8627.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 6570.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 5951.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 5752.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 5220.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 5105.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 5056.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 4984.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 4939.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 528.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 528.5
FF:10158-103A5 76 years, female 528.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.6
Pig sample Sample description nTPM
Midbrain
nTPM: 46.6
Samples: 4

Max nTPM: 59.6
Min nTPM: 34.9
Sample A Female 59.6
Sample B Female 52.5
Sample C Male 39.3
Sample D Male 34.9
Periaqueductal gray
nTPM: 37.3
Samples: 3

Max nTPM: 42.1
Min nTPM: 32.1
Sample B Female 42.1
Sample C Male 37.8
Sample D Male 32.1
Substantia nigra
nTPM: 46.4
Samples: 4

Max nTPM: 61.9
Min nTPM: 37.8
Sample A Female 61.9
Sample B Female 45.4
Sample C Male 40.4
Sample D Male 37.8
Superior colliculi
nTPM: 46.6
Samples: 4

Max nTPM: 55.2
Min nTPM: 38.2
Sample A Female 55.2
Sample B Female 47.9
Sample C Male 44.9
Sample D Male 38.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.