BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.8 nTPM
HPA:18.8 nTPM
GTEx:28.4 nTPM
FANTOM5:98.3 Scaled Tags Per Million
Pig:29.8 nTPM
Mouse:37.3 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.5
2288 Male, age 75, left hemisphere 18.4
2289 Male, age 61, right hemisphere 18.4
2481 Female, age 94, left hemisphere 17.7
1854 Male, age 80, left hemisphere 17.6
1857 Female, age 85, left hemisphere 17.3
1781 Male, age 74, unknown 17.2
2290 Female, age 72, unknown 17.0
2846 Female, age 79, unknown 16.7
Claustrum
nTPM: 18.8
2284 Female, age 91, both hemispheres 20.1
2645 Female, age 72, unknown 19.8
2292 Female, age 85, both hemispheres 19.6
2491 Male, age 75, both hemispheres 19.3
1956 Male, age 74, unknown 19.0
2198 Male, age 80, both hemispheres 18.5
2568 Male, age 61, both hemispheres 17.9
2196 Female, age 79, unknown 17.5
2392 Female, age 94, both hemispheres 17.1
Globus pallidus, externus
nTPM: 17.7
2567 Female, age 72, unknown 19.4
2646 Male, age 61, right hemisphere 18.7
2772 Female, age 79, unknown 17.3
2395 Male, age 75, both hemispheres 16.7
1996 Male, age 80, right hemisphere 16.3
Globus pallidus, internus
nTPM: 17.6
2566 Female, age 72, unknown 18.7
2111 Female, age 85, right hemisphere 18.5
2037 Male, age 80, right hemisphere 17.7
2483 Female, age 94, right hemisphere 17.6
1818 Male, age 74, unknown 17.2
2778 Female, age 91, both hemispheres 17.1
2287 Male, age 75, right hemisphere 16.4
Nucleus accumbens
nTPM: 17.7
1783 Male, age 74, unknown 18.7
2286 Male, age 75, left hemisphere 18.1
1856 Female, age 91, right hemisphere 17.9
1806 Female, age 85, left hemisphere 17.8
2732 Male, age 80, right hemisphere 17.8
2824 Male, age 61, right hemisphere 17.5
2391 Female, age 94, left hemisphere 17.4
2698 Female, age 72, unknown 16.4
Nucleus basalis of Meynert
nTPM: 17.9
2393 Male, age 80, right hemisphere 18.3
2484 Female, age 94, left hemisphere 18.1
2569 Male, age 61, both hemispheres 18.0
2821 Male, age 75, both hemispheres 17.2
Nucleus of the diagonal band
nTPM: 18.3
2029 Male, age 61, right hemisphere 19.3
2195 Female, age 85, both hemispheres 19.1
2775 Male, age 80, right hemisphere 18.9
1979 Male, age 74, unknown 17.9
1812 Female, age 91, both hemispheres 16.4
Olfactory tubercle
nTPM: 18.3
1998 Female, age 91, both hemispheres 19.5
2487 Female, age 94, left hemisphere 18.8
2856 Male, age 75, right hemisphere 18.3
1846 Male, age 80, right hemisphere 16.7
Putamen
nTPM: 18.1
2466 Female, age 79, unknown 19.2
2489 Female, age 72, unknown 18.5
2647 Male, age 75, left hemisphere 18.5
1838 Male, age 80, right hemisphere 17.9
1937 Female, age 91, right hemisphere 17.8
2482 Female, age 94, left hemisphere 17.7
1829 Male, age 74, unknown 17.2
Septal nuclei
nTPM: 18.1
2059 Female, age 85, both hemispheres 19.6
1960 Male, age 74, unknown 19.5
2009 Female, age 91, both hemispheres 18.5
2031 Female, age 72, unknown 18.1
2199 Male, age 80, right hemisphere 17.5
2394 Male, age 61, left hemisphere 17.4
2629 Female, age 94, right hemisphere 16.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 27.6
Samples: 246

Max nTPM: 42.1
Min nTPM: 16.7
Std nTPM: 4.8
Median nTPM: 27.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 42.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 40.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 39.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 37.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 37.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 37.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 37.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 37.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 37.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 36.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 36.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.4
Samples: 246

Max nTPM: 43.5
Min nTPM: 8.5
Std nTPM: 5.4
Median nTPM: 28.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 43.5
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 43.3
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 41.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 40.7
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 39.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 39.3
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 38.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 38.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 38.0
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 37.2
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 37.2
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Brain - Putamen (basal ganglia)
Average nTPM: 27.8
Samples: 205

Max nTPM: 38.9
Min nTPM: 17.0
Std nTPM: 4.8
Median nTPM: 27.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 38.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 38.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 38.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 37.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 36.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 36.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 36.1
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 36.0
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 35.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 35.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 35.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 73.1
FF:10164-103B2 76 years, female 73.1
Globus pallidus
Scaled Tags Per Million: 98.3
FF:10175-103C4 60 years, female 135.7
FF:10161-103A8 76 years, female 60.8
Nucleus accumbens
Scaled Tags Per Million: 85.5
FF:10037-101F1 23-56 years, mixed 85.5
Putamen
Scaled Tags Per Million: 83.5
FF:10176-103C5 60 years, female 83.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.8
Pig sample Sample description nTPM
Caudate
nTPM: 25.0
Samples: 4

Max nTPM: 30.3
Min nTPM: 20.5
Sample A Female 20.5
Sample B Female 26.0
Sample C Male 30.3
Sample D Male 23.2
Putamen
nTPM: 29.8
Samples: 4

Max nTPM: 37.4
Min nTPM: 24.1
Sample A Female 25.1
Sample B Female 24.1
Sample C Male 37.4
Sample D Male 32.6
Septum
nTPM: 21.8
Samples: 4

Max nTPM: 23.7
Min nTPM: 18.6
Sample A Female 23.7
Sample B Female 21.6
Sample C Male 23.2
Sample D Male 18.6
Ventral pallidum
nTPM: 24.1
Samples: 4

Max nTPM: 27.8
Min nTPM: 20.1
Sample A Female 20.1
Sample B Female 24.8
Sample C Male 27.8
Sample D Male 23.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 37.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.6
Samples: 4

Max nTPM: 37.2
Min nTPM: 34.4
Sample A Male 35.5
Sample B Male 35.1
Sample C Female 34.4
Sample D Female 37.2
Septum
nTPM: 35.4
Samples: 4

Max nTPM: 37.2
Min nTPM: 33.2
Sample A Male 34.4
Sample B Male 36.7
Sample C Female 33.2
Sample D Female 37.2
Ventral forebrain
nTPM: 37.3
Samples: 4

Max nTPM: 38.8
Min nTPM: 36.1
Sample A Male 37.3
Sample B Male 38.8
Sample C Female 37.0
Sample D Female 36.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
72002079 Antisense, RP_050915_02_F10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
72002079 Antisense, RP_050915_02_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

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