MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:18.6 nTPM
HPA:18.6 nTPM
GTEx:23.5 nTPM
FANTOM5:60.5 Scaled Tags Per Million
Pig:29.4 nTPM
Mouse:30.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.9
2219 Male, age 76, both hemispheres 19.4
2019 Male, age 18, unknown 19.1
2586 Male, age 75, left hemisphere 18.5
1827 Male, age 72, unknown 18.1
1833 Male, age 53, unknown 17.9
1830 Male, age 51, unknown 17.6
2411 Female, age 72, unknown 17.4
2666 Male, age 74, left hemisphere 17.2
2828 Female, age 72, unknown 17.2
1870 Female, age 42, unknown 16.8
Dorsal raphe nucleus
nTPM: 17.4
2047 Male, age 72, unknown 18.2
1828 Male, age 53, unknown 17.4
2750 Male, age 76, both hemispheres 17.4
2298 Female, age 72, unknown 17.1
2016 Female, age 72, unknown 16.7
Inferior colliculus
nTPM: 17.4
1890 Male, age 53, unknown 17.9
1848 Female, age 42, unknown 17.6
2097 Female, age 72, unknown 17.0
2849 Male, age 72, unknown 17.0
Median raphe nucleus
nTPM: 18.0
2220 Male, age 76, midline 18.0
Pedunculopontine tegmental nucleus
nTPM: 16.7
1921 Female, age 85, both hemispheres 17.2
2334 Male, age 80, both hemispheres 17.0
2338 Male, age 61, both hemispheres 16.0
Periaquaductal grey, anterior
nTPM: 18.6
2502 Female, age 75, unknown 19.4
1795 Male, age 51, unknown 19.0
1947 Male, age 18, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 17.1
2464 Female, age 72, unknown 18.7
2850 Male, age 76, both hemispheres 16.7
1840 Male, age 53, unknown 16.4
1831 Male, age 72, unknown 16.3
Periaquaductal grey, lateral
nTPM: 17.5
2272 Male, age 74, both hemispheres 18.3
2053 Male, age 18, unknown 17.2
2140 Male, age 76, both hemispheres 17.1
Pretectal area
nTPM: 18.1
1816 Male, age 51, unknown 19.1
2316 Male, age 76, right hemisphere 19.1
1817 Female, age 42, unknown 18.7
2007 Male, age 72, unknown 18.6
2407 Male, age 75, both hemispheres 18.2
2667 Female, age 75, unknown 18.2
2273 Male, age 74, both hemispheres 17.7
2224 Female, age 72, unknown 17.5
2825 Male, age 18, unknown 17.5
1944 Female, age 72, unknown 17.4
1815 Male, age 53, unknown 16.7
Red nucleus
nTPM: 17.7
2785 Male, age 18, unknown 19.0
2227 Male, age 72, unknown 18.6
2584 Male, age 75, left hemisphere 18.6
2588 Male, age 74, left hemisphere 18.6
2769 Male, age 72, unknown 18.1
2823 Male, age 76, right hemisphere 18.0
2725 Female, age 75, unknown 17.5
2503 Female, age 72, unknown 17.3
1904 Male, age 53, unknown 17.2
1954 Female, age 42, unknown 17.1
1821 Female, age 72, unknown 16.0
1865 Male, age 51, unknown 15.9
Substantia nigra
nTPM: 17.7
1916 Female, age 42, unknown 19.2
1941 Male, age 53, unknown 19.0
2241 Male, age 72, unknown 17.9
2590 Female, age 75, unknown 17.8
2665 Male, age 74, both hemispheres 17.7
1851 Male, age 51, unknown 17.6
2699 Male, age 18, unknown 17.6
2409 Female, age 72, unknown 17.0
2583 Male, age 75, right hemisphere 17.0
1889 Female, age 72, unknown 16.4
Superior colliculus
nTPM: 17.5
2664 Male, age 75, both hemispheres 19.3
1796 Male, age 53, unknown 18.1
2087 Female, age 72, unknown 17.9
2587 Male, age 74, left hemisphere 17.8
1895 Male, age 76, right hemisphere 17.7
1839 Male, age 51, unknown 17.5
2261 Male, age 18, unknown 17.2
1913 Female, age 42, unknown 16.9
2668 Female, age 75, unknown 16.6
1995 Male, age 72, unknown 15.6
Ventral tegmental area
nTPM: 17.5
1942 Male, age 51, unknown 18.3
1915 Female, age 42, unknown 18.2
2021 Male, age 53, unknown 17.4
2223 Female, age 72, unknown 17.2
2218 Male, age 76, both hemispheres 17.1
2410 Female, age 72, unknown 16.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.5
Samples: 139

Max nTPM: 52.6
Min nTPM: 10.1
Std nTPM: 5.7
Median nTPM: 23.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 52.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 34.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 32.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 31.8
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 31.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 31.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 30.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 30.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 30.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 30.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.5
FF:10158-103A5 76 years, female 60.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.4
Pig sample Sample description nTPM
Midbrain
nTPM: 28.6
Samples: 4

Max nTPM: 35.7
Min nTPM: 22.9
Sample A Female 35.7
Sample B Female 22.9
Sample C Male 30.1
Sample D Male 25.7
Periaqueductal gray
nTPM: 19.2
Samples: 3

Max nTPM: 20.9
Min nTPM: 17.5
Sample B Female 19.2
Sample C Male 20.9
Sample D Male 17.5
Substantia nigra
nTPM: 23.7
Samples: 4

Max nTPM: 28.4
Min nTPM: 19.5
Sample A Female 28.4
Sample B Female 19.5
Sample C Male 23.3
Sample D Male 23.5
Superior colliculi
nTPM: 29.5
Samples: 4

Max nTPM: 32.7
Min nTPM: 26.0
Sample A Female 32.7
Sample B Female 26.0
Sample C Male 32.2
Sample D Male 26.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.4
Samples: 4

Max nTPM: 34.7
Min nTPM: 27.9
Sample A Male 29.4
Sample B Male 27.9
Sample C Female 34.7
Sample D Female 29.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
72002079 Antisense, RP_050915_02_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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