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S100A6
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  • S100A6
TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Bowman's capsule: Medium
Cells in glomeruli: Medium
Collecting ducts: Medium
Distal tubules: Medium
Proximal tubules (cell body): Medium
Proximal tubules (microvilli): Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2326.6 nTPM
HPA:753.8 nTPM
GTEx:2326.6 nTPM
FANTOM5:365.7 Scaled Tags Per Million

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA007575Antibody CAB002601Antibody CAB040549
Bowman's capsule Medium--
Cells in glomeruli MediumHighLow
Cells in tubules -MediumMedium
Collecting ducts Medium--
Distal tubules Medium--
Proximal tubules (cell body) Medium--
Proximal tubules (microvilli) Not detected--






KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 753.8
overview
Female, age 58
Kidney sample 55
nTPM: 863.9
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 628.6
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 1241.1
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 728.2
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 558.5
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 738.5
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 941.7
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 668.9
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 414.6
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2326.6
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 1177.5
Samples: 85

Max nTPM: 3305.7
Min nTPM: 574.7
Std nTPM: 588.1
Median nTPM: 1033.5
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 3305.7
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 3177.2
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 2949.9
GTEX-12696-0926-SM-5FQTV 60-69 years, male 2840.2
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 2737.5
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 2677.7
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 1961.3
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 1958.2
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 1867.9
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 1828.6
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 1823.8
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 1793.6
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 1568.3
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 1448.6
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 1379.6
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 1341.8
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 1333.2
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 1326.8
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 1315.1
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 1312.4
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 1302.8
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 1286.5
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 1273.6
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 1265.6
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 1243.4
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 1224.8
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 1219.1
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 1197.8
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 1197.1
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 1188.7
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 1175.7
GTEX-13112-2126-SM-5GCO4 50-59 years, male 1165.0
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 1130.7
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 1129.5
GTEX-RN64-1626-SM-48FD7 50-59 years, male 1123.8
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 1113.2
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 1105.9
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 1066.8
GTEX-14C39-2126-SM-664OH 40-49 years, male 1060.0
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 1058.6
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 1056.9
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 1042.7
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 1033.5
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 1021.0
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 1013.1
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 1009.3
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 1005.7
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 1003.6
GTEX-NPJ8-2226-SM-3TW8D 40-49 years, male 997.0
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 979.7
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 938.4
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 929.5
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 903.5
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 887.3
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 883.5
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 882.4
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 877.5
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 868.8
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 849.3
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 840.9
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 826.0
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 812.6
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 787.8
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 780.3
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 779.6
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 773.3
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 767.1
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 757.4
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 756.5
GTEX-O5YV-1226-SM-EV795 60-69 years, female 751.6
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 746.5
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 708.7
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 702.2
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 686.8
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 677.7
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 672.4
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 665.7
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 665.3
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 659.4
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 638.0
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 611.4
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 607.0
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 602.0
GTEX-QDVN-1626-SM-48TZC 50-59 years, male 578.9
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 574.7
Show allShow less
Kidney - Medulla
Average nTPM: 2326.6
Samples: 4

Max nTPM: 4741.0
Min nTPM: 1370.9
Std nTPM: 1402.5
Median nTPM: 1597.3
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 4741.0
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 1773.4
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 1421.3
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 1370.9

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 365.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 365.7
FF:10017-101C8 60,62,63 years, female 365.7

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