MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:861.1 nTPM
HPA:861.1 nTPM
GTEx:902.9 nTPM
FANTOM5:8.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 861.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 812.9
1870 Female, age 42, unknown 836.3
2666 Male, age 74, left hemisphere 823.2
2828 Female, age 72, unknown 822.0
1830 Male, age 51, unknown 817.6
1833 Male, age 53, unknown 817.3
2411 Female, age 72, unknown 812.8
2219 Male, age 76, both hemispheres 807.7
1827 Male, age 72, unknown 804.8
2019 Male, age 18, unknown 796.8
2586 Male, age 75, left hemisphere 790.9
Dorsal raphe nucleus
nTPM: 812.8
2016 Female, age 72, unknown 820.4
2298 Female, age 72, unknown 816.3
2750 Male, age 76, both hemispheres 816.3
1828 Male, age 53, unknown 807.1
2047 Male, age 72, unknown 803.8
Inferior colliculus
nTPM: 807.8
1890 Male, age 53, unknown 816.0
2849 Male, age 72, unknown 810.8
1848 Female, age 42, unknown 807.6
2097 Female, age 72, unknown 796.8
Median raphe nucleus
nTPM: 836.5
2220 Male, age 76, midline 836.5
Pedunculopontine tegmental nucleus
nTPM: 861.1
2338 Male, age 61, both hemispheres 935.1
2334 Male, age 80, both hemispheres 846.1
1921 Female, age 85, both hemispheres 802.1
Periaquaductal grey, anterior
nTPM: 808.0
2502 Female, age 75, unknown 812.6
1795 Male, age 51, unknown 807.7
1947 Male, age 18, unknown 803.6
Periaquaductal grey, dorsal
nTPM: 818.9
2850 Male, age 76, both hemispheres 835.6
1831 Male, age 72, unknown 823.2
1840 Male, age 53, unknown 812.5
2464 Female, age 72, unknown 804.2
Periaquaductal grey, lateral
nTPM: 820.2
2053 Male, age 18, unknown 825.6
2140 Male, age 76, both hemispheres 817.5
2272 Male, age 74, both hemispheres 817.4
Pretectal area
nTPM: 808.6
2224 Female, age 72, unknown 817.1
2316 Male, age 76, right hemisphere 815.9
1815 Male, age 53, unknown 815.3
1817 Female, age 42, unknown 815.0
2825 Male, age 18, unknown 810.7
2273 Male, age 74, both hemispheres 810.0
1944 Female, age 72, unknown 809.3
1816 Male, age 51, unknown 802.3
2407 Male, age 75, both hemispheres 801.6
2007 Male, age 72, unknown 800.0
2667 Female, age 75, unknown 797.6
Red nucleus
nTPM: 825.5
2503 Female, age 72, unknown 854.0
1865 Male, age 51, unknown 840.8
1904 Male, age 53, unknown 832.0
1821 Female, age 72, unknown 829.7
2725 Female, age 75, unknown 826.7
2769 Male, age 72, unknown 824.4
1954 Female, age 42, unknown 819.8
2785 Male, age 18, unknown 818.0
2823 Male, age 76, right hemisphere 817.6
2584 Male, age 75, left hemisphere 816.1
2227 Male, age 72, unknown 815.9
2588 Male, age 74, left hemisphere 810.9
Substantia nigra
nTPM: 830.1
2699 Male, age 18, unknown 869.8
1851 Male, age 51, unknown 846.1
2665 Male, age 74, both hemispheres 834.6
2241 Male, age 72, unknown 834.5
2409 Female, age 72, unknown 832.4
2590 Female, age 75, unknown 827.0
1916 Female, age 42, unknown 825.0
1889 Female, age 72, unknown 819.9
1941 Male, age 53, unknown 810.7
2583 Male, age 75, right hemisphere 800.9
Superior colliculus
nTPM: 817.9
2587 Male, age 74, left hemisphere 844.6
1995 Male, age 72, unknown 842.0
1913 Female, age 42, unknown 841.3
2668 Female, age 75, unknown 824.0
1796 Male, age 53, unknown 819.3
1839 Male, age 51, unknown 806.3
1895 Male, age 76, right hemisphere 806.3
2261 Male, age 18, unknown 806.1
2087 Female, age 72, unknown 802.5
2664 Male, age 75, both hemispheres 786.9
Ventral tegmental area
nTPM: 836.4
2223 Female, age 72, unknown 854.2
1915 Female, age 42, unknown 842.1
2218 Male, age 76, both hemispheres 835.4
2021 Male, age 53, unknown 834.4
2410 Female, age 72, unknown 834.2
1942 Male, age 51, unknown 818.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 902.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 902.9
Samples: 139

Max nTPM: 3039.8
Min nTPM: 271.0
Std nTPM: 383.3
Median nTPM: 813.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3039.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2306.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1938.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1633.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1603.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1596.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1592.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1514.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1499.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1492.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1464.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.7
FF:10158-103A5 76 years, female 8.7

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The Human Protein Atlas

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