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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: High
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
148.518
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:11462.8 nTPM
GTEx:21154.7 nTPM
FANTOM5:5823.4 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA049222Antibody CAB002300
Glial cells LowHigh
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA049222
Hippocampal formation mean intensity 148.518
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Polymorph layer of the dentate gyrus 138.668
Molecular layer of the dentate gyrus 125.026
Granular dentate gyrus 81.975
CA1 - oriens layer 130.037
CA1 - pyramidal layer 110.896
CA1 - radiatum layer 123.111
CA2 - oriens layer 116.883
CA2 - pyramidal layer 100.441
CA2 - radiatum layer 140.682
CA3 - oriens layer 97.050
CA3 - pyramidal layer 109.094
CA3 - radiatum layer 140.054
Stratum lucidum 148.518
Lacunosum moleculare 143.709
Subiculum 87.033

HIPPOCAMPUS - HPA Brain RNA-seq
Avg nTPM 11462.8
Sample id Sample description nTPM
Hippocampus
nTPM: 11462.8
2529 Female, age 94, left hemisphere 12297.7
1911 Female, age 85, right hemisphere 11828.6
2621 Female, age 67, right hemisphere 11799.7
1898 Male, age 80, left hemisphere 11443.4
2148 Female, age 91, left hemisphere 10819.1
1855 Male, age 76, left hemisphere 10588.6

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21154.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21154.7
Samples: 197

Max nTPM: 112839.7
Min nTPM: 574.2
Std nTPM: 15421.0
Median nTPM: 17404.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 112839.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 84502.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 66765.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 66511.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 63482.8
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 59889.3
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 59733.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 58905.8
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 58574.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 58022.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 50534.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 46317.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 44144.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 42518.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 42029.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 41769.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 41014.3
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 40164.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 39627.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 39290.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 39046.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 38963.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 37842.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 37750.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 37207.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 36094.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 35769.8
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 35339.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 34860.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 33742.6
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 33419.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 32633.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 32576.1
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 32330.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 32094.5
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 31911.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 31804.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 31685.3
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 30641.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 30341.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 29707.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 29376.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 28523.9
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 28448.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 28435.8
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 27834.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 27165.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 27055.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 26745.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 26600.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 25869.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 25856.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 25669.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 25397.8
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 25307.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 25066.0
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 24380.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 24062.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 23918.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 23609.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 23269.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 23117.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 22678.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 22407.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 22393.0
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 22217.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 22163.5
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 21973.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 21878.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 21770.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 21673.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 21267.7
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 21007.4
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 20872.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 20846.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 20746.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 20642.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 20571.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 20284.1
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 20148.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 20088.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 19737.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 19443.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 19434.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 18928.8
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 18865.6
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 18753.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 18612.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 18516.1
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 18409.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 18377.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 18309.9
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 18188.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 18093.4
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 18009.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 17734.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 17685.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 17660.2
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 17404.5
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 17045.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 16908.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 16857.5
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 16568.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 16509.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 16305.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 15984.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 15971.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 15908.1
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 15897.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 15719.9
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 15565.6
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 15291.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 15130.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 14885.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 14849.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 14777.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 14698.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 14619.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 14608.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 14524.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 14523.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 14457.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 14403.8
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 14266.3
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 14147.2
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 14064.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 13866.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 13753.0
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 13658.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 13424.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 13079.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 13016.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 13014.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 12739.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 12719.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 12699.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 12485.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 12468.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 12457.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 12037.3
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 11963.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 11837.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 11780.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 11621.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 11592.7
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 11578.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 10783.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 10668.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 10601.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 10549.7
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 10448.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 10429.1
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 10345.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 10318.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 10238.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 10139.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 10131.1
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 10026.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 9351.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 9273.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 9234.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 9143.7
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 9127.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 9093.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 9021.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 9009.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 8989.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 8919.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 8887.5
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 8850.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 8758.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 7878.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 7565.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 7534.7
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 7454.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 7253.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 7163.8
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 7087.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 7067.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 6555.5
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 6282.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 6262.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 6230.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 6103.4
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 6049.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 5990.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 5018.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 4952.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 4763.7
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 4452.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 4352.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 4314.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 3834.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 3630.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2710.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 1862.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 574.2
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 5823.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5823.4
FF:10153-102I9 76 years, female 6651.5
FF:10169-103B7 60 years, female 4995.3

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