We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RPS4X
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • RPS4X
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:689.9 nTPM
HPA:388.1 nTPM
GTEx:689.9 nTPM
FANTOM5:85.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA000857
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 388.1
overview
Male, age 65
Small intestine sample 232
nTPM: 444.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 336
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 447.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 324.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 689.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 689.9
Samples: 187

Max nTPM: 1468.8
Min nTPM: 292.2
Std nTPM: 211.4
Median nTPM: 643.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1468.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1236.2
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1210.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1173.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1168.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1163.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1156.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1146.8
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1136.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1135.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1127.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1081.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1074.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1073.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1052.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 998.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 987.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 979.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 978.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 972.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 962.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 950.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 942.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 940.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 936.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 933.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 928.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 921.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 918.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 917.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 916.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 903.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 896.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 895.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 888.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 873.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 873.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 869.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 855.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 851.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 849.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 848.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 847.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 836.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 834.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 828.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 808.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 808.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 807.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 806.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 803.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 793.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 792.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 791.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 783.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 783.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 778.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 775.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 763.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 759.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 758.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 755.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 752.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 752.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 743.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 739.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 736.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 733.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 724.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 720.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 712.5
GTEX-1192X-2526-SM-59868 50-59 years, male 710.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 710.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 707.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 707.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 697.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 695.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 693.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 689.5
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 686.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 682.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 682.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 680.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 673.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 672.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 671.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 668.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 662.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 657.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 656.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 652.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 652.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 650.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 643.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 641.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 640.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 639.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 637.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 633.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 630.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 629.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 628.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 628.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 627.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 617.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 613.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 612.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 611.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 604.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 604.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 598.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 596.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 595.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 594.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 593.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 592.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 590.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 590.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 585.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 581.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 581.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 578.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 576.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 575.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 572.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 569.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 568.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 567.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 558.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 557.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 557.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 557.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 557.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 553.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 549.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 548.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 547.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 546.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 544.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 542.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 538.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 537.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 535.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 533.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 527.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 523.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 523.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 505.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 504.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 503.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 503.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 501.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 500.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 499.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 493.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 493.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 492.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 482.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 482.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 477.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 476.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 475.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 470.7
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 469.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 469.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 466.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 462.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 461.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 461.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 446.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 439.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 434.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 431.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 428.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 413.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 410.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 405.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 397.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 396.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 393.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 390.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 384.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 384.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 379.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 370.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 370.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 292.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 85.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 85.7
FF:10024-101D6 15,40,85 years, mixed 85.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.