MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:123.4 nTPM
HPA:123.4 nTPM
GTEx:54.4 nTPM
FANTOM5:96.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 123.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 111.1
2586 Male, age 75, left hemisphere 156.4
2019 Male, age 18, unknown 130.8
2666 Male, age 74, left hemisphere 126.2
2828 Female, age 72, unknown 118.3
1827 Male, age 72, unknown 108.0
1870 Female, age 42, unknown 99.4
1830 Male, age 51, unknown 99.0
1833 Male, age 53, unknown 97.0
2411 Female, age 72, unknown 91.7
2219 Male, age 76, both hemispheres 83.7
Dorsal raphe nucleus
nTPM: 87.7
1828 Male, age 53, unknown 92.4
2016 Female, age 72, unknown 91.1
2047 Male, age 72, unknown 87.4
2750 Male, age 76, both hemispheres 83.9
2298 Female, age 72, unknown 83.7
Inferior colliculus
nTPM: 105.0
2849 Male, age 72, unknown 107.8
2097 Female, age 72, unknown 106.8
1848 Female, age 42, unknown 102.9
1890 Male, age 53, unknown 102.2
Median raphe nucleus
nTPM: 80.7
2220 Male, age 76, midline 80.7
Pedunculopontine tegmental nucleus
nTPM: 85.7
1921 Female, age 85, both hemispheres 88.2
2334 Male, age 80, both hemispheres 85.8
2338 Male, age 61, both hemispheres 83.0
Periaquaductal grey, anterior
nTPM: 123.4
1795 Male, age 51, unknown 124.5
1947 Male, age 18, unknown 123.5
2502 Female, age 75, unknown 122.3
Periaquaductal grey, dorsal
nTPM: 101.7
1840 Male, age 53, unknown 107.9
2464 Female, age 72, unknown 102.9
2850 Male, age 76, both hemispheres 100.0
1831 Male, age 72, unknown 95.8
Periaquaductal grey, lateral
nTPM: 100.0
2140 Male, age 76, both hemispheres 108.2
2053 Male, age 18, unknown 101.4
2272 Male, age 74, both hemispheres 90.4
Pretectal area
nTPM: 119.9
1817 Female, age 42, unknown 156.1
2007 Male, age 72, unknown 143.3
1816 Male, age 51, unknown 137.1
1944 Female, age 72, unknown 134.4
1815 Male, age 53, unknown 128.9
2407 Male, age 75, both hemispheres 125.0
2667 Female, age 75, unknown 117.1
2825 Male, age 18, unknown 98.5
2273 Male, age 74, both hemispheres 95.8
2316 Male, age 76, right hemisphere 94.1
2224 Female, age 72, unknown 88.8
Red nucleus
nTPM: 105.3
2785 Male, age 18, unknown 132.5
2584 Male, age 75, left hemisphere 118.9
2588 Male, age 74, left hemisphere 106.7
1865 Male, age 51, unknown 104.5
1904 Male, age 53, unknown 104.2
2503 Female, age 72, unknown 103.8
2769 Male, age 72, unknown 101.3
1954 Female, age 42, unknown 100.7
2725 Female, age 75, unknown 100.5
2227 Male, age 72, unknown 99.7
1821 Female, age 72, unknown 96.4
2823 Male, age 76, right hemisphere 94.9
Substantia nigra
nTPM: 92.3
2583 Male, age 75, right hemisphere 123.8
1889 Female, age 72, unknown 117.2
2590 Female, age 75, unknown 98.7
2665 Male, age 74, both hemispheres 94.2
1851 Male, age 51, unknown 87.1
2409 Female, age 72, unknown 85.2
1916 Female, age 42, unknown 81.2
1941 Male, age 53, unknown 80.5
2241 Male, age 72, unknown 80.3
2699 Male, age 18, unknown 74.8
Superior colliculus
nTPM: 115.1
2664 Male, age 75, both hemispheres 155.7
1995 Male, age 72, unknown 122.4
2087 Female, age 72, unknown 120.7
1796 Male, age 53, unknown 120.6
2261 Male, age 18, unknown 110.4
1913 Female, age 42, unknown 110.1
1839 Male, age 51, unknown 109.5
2668 Female, age 75, unknown 108.6
2587 Male, age 74, left hemisphere 101.9
1895 Male, age 76, right hemisphere 91.2
Ventral tegmental area
nTPM: 91.3
2223 Female, age 72, unknown 103.6
2410 Female, age 72, unknown 94.2
1942 Male, age 51, unknown 92.2
2021 Male, age 53, unknown 91.6
1915 Female, age 42, unknown 84.1
2218 Male, age 76, both hemispheres 82.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.4
Samples: 139

Max nTPM: 112.9
Min nTPM: 25.3
Std nTPM: 13.3
Median nTPM: 53.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 112.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 93.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 90.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 87.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 81.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 78.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 77.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 75.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 74.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 73.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 72.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.3
FF:10158-103A5 76 years, female 96.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.