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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:266.2 nTPM
HPA:266.2 nTPM
FANTOM5:358.5 Scaled Tags Per Million
Pig:46.9 nTPM
Mouse:69.0 nTPM
Allen mouse:1.0 Expression energy

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max nTPM 266.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 206.7
2032 Female, age 42, unknown 226.5
2497 Male, age 66, unknown 225.8
2396 Male, age 61, right hemisphere 167.8
Centromedial thalamic nucleus
nTPM: 266.2
2279 Female, age 85, left hemisphere 331.6
2401 Male, age 76, right hemisphere 200.8
Habenula
nTPM: 137.5
2203 Male, age 61, left hemisphere 147.6
1957 Male, age 80, both hemispheres 135.7
2252 Male, age 62, unknown 135.4
2276 Male, age 66, unknown 131.3
Lateral geniculate body
nTPM: 210.5
2841 Male, age 80, both hemispheres 234.9
2575 Female, age 94, right hemisphere 233.1
2659 Male, age 66, unknown 228.8
2399 Male, age 61, left hemisphere 228.0
1953 Male, age 62, unknown 208.6
2035 Female, age 72, unknown 196.7
2857 Male, age 74, right hemisphere 195.1
2106 Female, age 67, right hemisphere 158.8
Lateral thalamic nuclei
nTPM: 212.1
2577 Male, age 74, both hemispheres 271.6
2661 Female, age 72, unknown 250.6
2573 Female, age 94, left hemisphere 213.6
2765 Female, age 67, both hemispheres 185.2
1903 Male, age 76, left hemisphere 139.5
Medial dorsal thalamic nucleus
nTPM: 174.9
2660 Female, age 72, unknown 264.8
2572 Female, age 94, right hemisphere 227.5
2576 Male, age 74, both hemispheres 217.9
1930 Female, age 42, unknown 172.2
1859 Male, age 76, both hemispheres 169.1
2492 Male, age 75, right hemisphere 159.3
2283 Male, age 80, right hemisphere 157.9
2039 Female, age 72, unknown 157.0
1810 Male, age 48, unknown 156.4
2498 Male, age 66, unknown 151.7
2402 Female, age 67, both hemispheres 151.4
2026 Male, age 62, unknown 145.6
1971 Male, age 61, right hemisphere 143.2
Medial geniculate body
nTPM: 199.1
2571 Male, age 75, right hemisphere 263.4
2217 Female, age 72, unknown 228.7
2650 Female, age 94, left hemisphere 199.1
2207 Male, age 80, right hemisphere 191.5
2657 Male, age 74, right hemisphere 186.5
2049 Male, age 76, both hemispheres 165.0
1811 Female, age 42, unknown 159.2
Nucleus reuniens
nTPM: 245.7
2210 Female, age 85, left hemisphere 366.0
2205 Male, age 80, left hemisphere 237.0
2212 Female, age 67, left hemisphere 134.0
Nucleus rhomboideus
nTPM: 218.9
2280 Female, age 85, left hemisphere 370.6
2206 Male, age 80, both hemispheres 149.8
2213 Female, age 67, left hemisphere 136.3
Posterior thalamic nucleus
nTPM: 223.1
2649 Female, age 94, both hemispheres 374.3
2655 Male, age 74, right hemisphere 221.7
2266 Male, age 76, right hemisphere 155.7
2495 Female, age 67, right hemisphere 140.8
Pulvinar
nTPM: 193.5
2398 Male, age 61, left hemisphere 230.3
1899 Female, age 42, unknown 213.9
2724 Male, age 74, right hemisphere 204.5
2499 Male, age 66, unknown 201.4
1929 Male, age 48, unknown 185.8
1972 Male, age 62, unknown 184.7
2582 Female, age 72, unknown 181.3
1932 Male, age 80, right hemisphere 180.6
2496 Female, age 67, right hemisphere 176.8
2214 Male, age 76, right hemisphere 175.4
Subthalamic nucleus
nTPM: 223.8
2056 Female, age 72, unknown 272.0
2282 Male, age 61, both hemispheres 262.9
2658 Male, age 74, both hemispheres 242.0
2124 Male, age 62, unknown 240.2
2216 Male, age 48, unknown 235.1
2275 Male, age 66, unknown 197.3
2779 Female, age 42, unknown 196.9
2406 Female, age 72, unknown 144.2
Ventral posterolateral thalamic nucleus
nTPM: 206.7
2578 Male, age 74, both hemispheres 276.6
2581 Female, age 72, unknown 243.1
2740 Male, age 76, right hemisphere 198.3
2397 Male, age 61, right hemisphere 197.4
2570 Male, age 75, right hemisphere 167.4
2197 Male, age 80, both hemispheres 157.6
Ventral posteromedial thalamic nucleus
nTPM: 187.0
2653 Male, age 74, both hemispheres 244.6
2127 Male, age 76, right hemisphere 191.8
2281 Male, age 75, right hemisphere 173.7
2202 Male, age 61, left hemisphere 167.9
2758 Male, age 80, both hemispheres 156.9
Ventral thalamic nuclei
nTPM: 213.9
2652 Male, age 74, left hemisphere 267.7
2580 Male, age 66, unknown 243.0
2291 Female, age 72, unknown 236.7
1845 Male, age 48, unknown 221.7
2858 Female, age 72, unknown 220.3
2204 Male, age 80, both hemispheres 192.2
1860 Male, age 76, both hemispheres 186.1
2285 Male, age 62, unknown 178.7
1912 Female, age 42, unknown 178.4
Ventromedial nucleus
nTPM: 117.2
1982 Female, age 72, unknown 118.5
1822 Female, age 42, unknown 115.9
Zona incerta
nTPM: 222.2
2822 Male, age 74, right hemisphere 256.3
2663 Female, age 72, unknown 247.0
2215 Male, age 66, unknown 224.0
2403 Male, age 62, unknown 222.6
2208 Male, age 80, right hemisphere 161.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 358.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 358.5
FF:10154-103A1 76 years, female 358.5

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 46.9
Pig sample Sample description nTPM
Thalamus
nTPM: 46.9
Samples: 4

Max nTPM: 92.1
Min nTPM: 29.0
Sample A Female 31.5
Sample B Female 29.0
Sample C Male 34.9
Sample D Male 92.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 69.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 69.1
Samples: 4

Max nTPM: 76.6
Min nTPM: 63.4
Sample A Male 63.4
Sample B Male 65.7
Sample C Female 76.6
Sample D Female 70.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 1.0
75749420 Antisense, RP_060518_04_E04, Mouse strain C57BL/6J (56 days, male) 1.2
79556595 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.7
79360278 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.7

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