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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:251.0 nTPM
HPA:251.0 nTPM
GTEx:187.9 nTPM
FANTOM5:154.1 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:15.5 nTPM
Allen mouse:0.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 251.0
Sample id Sample description nTPM
Amygdala
nTPM: 188.7
2695 Female, age 67, right hemisphere 226.7
2814 Male, age 76, right hemisphere 196.9
2517 Female, age 94, left hemisphere 191.4
2514 Male, age 75, right hemisphere 177.2
1987 Female, age 91, left hemisphere 151.3
Basal amygdala
nTPM: 210.9
2827 Female, age 67, right hemisphere 346.1
2685 Female, age 94, left hemisphere 220.9
2609 Male, age 75, right hemisphere 194.0
2110 Male, age 80, left hemisphere 193.0
1955 Male, age 76, both hemispheres 163.9
2243 Female, age 91, right hemisphere 147.5
Central amygdala
nTPM: 227.1
2826 Female, age 94, left hemisphere 415.3
2515 Male, age 75, right hemisphere 185.1
2239 Male, age 80, left hemisphere 181.3
2701 Female, age 91, right hemisphere 178.6
1905 Male, age 76, both hemispheres 175.0
Corticomedial amygdala
nTPM: 168.0
2535 Female, age 67, right hemisphere 238.0
2428 Male, age 75, right hemisphere 172.7
2429 Female, age 94, left hemisphere 164.2
2240 Male, age 76, both hemispheres 155.2
2829 Male, age 80, left hemisphere 154.4
2242 Female, age 91, right hemisphere 123.7
Lateral amygdala
nTPM: 251.0
2830 Female, age 67, right hemisphere 400.9
2534 Female, age 94, left hemisphere 275.7
2516 Male, age 75, right hemisphere 253.1
2256 Male, age 80, left hemisphere 219.6
1883 Male, age 76, both hemispheres 179.9
2255 Female, age 91, right hemisphere 176.6
Stria terminalis, bed nucleus
nTPM: 148.2
1974 Female, age 91, both hemispheres 161.8
2201 Male, age 74, unknown 152.3
2486 Female, age 94, both hemispheres 130.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 187.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 187.9
Samples: 152

Max nTPM: 808.5
Min nTPM: 4.5
Std nTPM: 146.7
Median nTPM: 135.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 808.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 730.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 716.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 638.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 531.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 529.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 489.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 488.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 474.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 461.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 456.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 427.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 420.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 413.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 412.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 412.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 395.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 393.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 384.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 350.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 349.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 328.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 325.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 310.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 306.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 303.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 283.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 275.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 274.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 268.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 267.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 264.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 254.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 247.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 244.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 241.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 241.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 241.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 237.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 233.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 230.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 227.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 226.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 224.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 213.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 212.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 211.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 211.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 210.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 210.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 205.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 203.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 202.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 197.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 195.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 190.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 190.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 184.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 183.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 181.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 179.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 178.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 177.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 175.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 175.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 172.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 165.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 159.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 158.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 155.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 145.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 141.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 140.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 139.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 138.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 135.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 134.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 134.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 130.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 129.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 128.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 127.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 127.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 124.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 117.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 116.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 116.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 112.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 110.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 109.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 106.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 105.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 104.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 104.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 103.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 102.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 102.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 101.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 101.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 100.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 100.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 97.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 97.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 95.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 94.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 93.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 91.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 88.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 88.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 86.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 84.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 83.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 82.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 81.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 81.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 80.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 80.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 79.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 78.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 78.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 78.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 78.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 77.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 77.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 75.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 74.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 74.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 70.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 70.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 70.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 68.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 67.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 67.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 67.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 67.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 66.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 66.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 64.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 62.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 62.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 61.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 61.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 58.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 56.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 52.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 51.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 48.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 46.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 38.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 31.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 154.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 154.1
FF:10151-102I7 76 years, female 154.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 21.0
Pig sample Sample description nTPM
Amygdala
nTPM: 21.0
Samples: 4

Max nTPM: 27.0
Min nTPM: 15.5
Sample A Female 19.2
Sample B Female 27.0
Sample C Male 22.4
Sample D Male 15.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 15.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 15.6
Samples: 4

Max nTPM: 21.4
Min nTPM: 12.3
Sample A Male 15.3
Sample B Male 12.3
Sample C Female 21.4
Sample D Female 13.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.6
75749420 Antisense, RP_060518_04_E04, Mouse strain C57BL/6J (56 days, male) 0.7
79556595 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.6
79360278 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.5

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