MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:277.5 nTPM
HPA:277.5 nTPM
GTEx:210.0 nTPM
FANTOM5:283.4 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:54.9 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 277.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 229.3
1830 Male, age 51, unknown 263.0
2666 Male, age 74, left hemisphere 255.9
1833 Male, age 53, unknown 255.7
2411 Female, age 72, unknown 238.7
2586 Male, age 75, left hemisphere 233.0
2019 Male, age 18, unknown 227.3
1870 Female, age 42, unknown 221.9
2828 Female, age 72, unknown 214.7
2219 Male, age 76, both hemispheres 201.6
1827 Male, age 72, unknown 181.7
Dorsal raphe nucleus
nTPM: 180.1
2750 Male, age 76, both hemispheres 237.8
2016 Female, age 72, unknown 192.5
1828 Male, age 53, unknown 176.1
2047 Male, age 72, unknown 150.4
2298 Female, age 72, unknown 143.7
Inferior colliculus
nTPM: 178.4
2849 Male, age 72, unknown 186.2
1890 Male, age 53, unknown 183.7
1848 Female, age 42, unknown 182.1
2097 Female, age 72, unknown 161.3
Median raphe nucleus
nTPM: 160.6
2220 Male, age 76, midline 160.6
Pedunculopontine tegmental nucleus
nTPM: 201.2
2334 Male, age 80, both hemispheres 212.8
2338 Male, age 61, both hemispheres 202.3
1921 Female, age 85, both hemispheres 188.6
Periaquaductal grey, anterior
nTPM: 181.3
1947 Male, age 18, unknown 195.2
2502 Female, age 75, unknown 190.5
1795 Male, age 51, unknown 158.4
Periaquaductal grey, dorsal
nTPM: 158.0
2464 Female, age 72, unknown 193.7
1831 Male, age 72, unknown 161.8
1840 Male, age 53, unknown 139.9
2850 Male, age 76, both hemispheres 136.8
Periaquaductal grey, lateral
nTPM: 151.8
2053 Male, age 18, unknown 161.2
2272 Male, age 74, both hemispheres 157.6
2140 Male, age 76, both hemispheres 136.6
Pretectal area
nTPM: 176.7
1815 Male, age 53, unknown 229.6
2316 Male, age 76, right hemisphere 204.4
1817 Female, age 42, unknown 200.2
2007 Male, age 72, unknown 192.2
2407 Male, age 75, both hemispheres 184.2
2825 Male, age 18, unknown 178.6
1816 Male, age 51, unknown 159.6
2224 Female, age 72, unknown 151.7
2667 Female, age 75, unknown 150.7
1944 Female, age 72, unknown 149.6
2273 Male, age 74, both hemispheres 142.7
Red nucleus
nTPM: 277.5
1904 Male, age 53, unknown 323.5
1865 Male, age 51, unknown 311.5
2503 Female, age 72, unknown 306.4
2588 Male, age 74, left hemisphere 301.9
1821 Female, age 72, unknown 292.0
2769 Male, age 72, unknown 280.1
2227 Male, age 72, unknown 277.3
2823 Male, age 76, right hemisphere 269.3
2785 Male, age 18, unknown 265.3
1954 Female, age 42, unknown 262.6
2725 Female, age 75, unknown 234.8
2584 Male, age 75, left hemisphere 205.0
Substantia nigra
nTPM: 190.7
2409 Female, age 72, unknown 217.5
2590 Female, age 75, unknown 206.8
1889 Female, age 72, unknown 203.5
2665 Male, age 74, both hemispheres 201.5
1851 Male, age 51, unknown 198.0
2583 Male, age 75, right hemisphere 191.9
2699 Male, age 18, unknown 183.3
2241 Male, age 72, unknown 178.5
1941 Male, age 53, unknown 166.3
1916 Female, age 42, unknown 159.6
Superior colliculus
nTPM: 209.3
1995 Male, age 72, unknown 255.2
2668 Female, age 75, unknown 240.7
1895 Male, age 76, right hemisphere 236.2
1913 Female, age 42, unknown 228.8
2587 Male, age 74, left hemisphere 220.8
1839 Male, age 51, unknown 211.3
2664 Male, age 75, both hemispheres 184.3
1796 Male, age 53, unknown 179.2
2261 Male, age 18, unknown 173.2
2087 Female, age 72, unknown 162.9
Ventral tegmental area
nTPM: 191.5
2410 Female, age 72, unknown 234.7
2223 Female, age 72, unknown 215.8
1942 Male, age 51, unknown 180.1
1915 Female, age 42, unknown 178.3
2218 Male, age 76, both hemispheres 172.8
2021 Male, age 53, unknown 167.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 210.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 210.0
Samples: 139

Max nTPM: 588.9
Min nTPM: 38.7
Std nTPM: 118.8
Median nTPM: 183.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 588.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 585.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 513.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 472.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 472.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 471.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 451.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 448.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 442.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 429.1
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 424.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 283.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 283.4
FF:10158-103A5 76 years, female 283.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.8
Pig sample Sample description nTPM
Midbrain
nTPM: 59.8
Samples: 4

Max nTPM: 117.7
Min nTPM: 31.3
Sample A Female 117.7
Sample B Female 55.5
Sample C Male 31.3
Sample D Male 34.5
Periaqueductal gray
nTPM: 39.4
Samples: 3

Max nTPM: 45.4
Min nTPM: 29.2
Sample B Female 45.4
Sample C Male 29.2
Sample D Male 43.5
Substantia nigra
nTPM: 59.1
Samples: 4

Max nTPM: 90.1
Min nTPM: 42.9
Sample A Female 56.0
Sample B Female 42.9
Sample C Male 47.5
Sample D Male 90.1
Superior colliculi
nTPM: 49.3
Samples: 4

Max nTPM: 52.8
Min nTPM: 44.5
Sample A Female 50.9
Sample B Female 49.0
Sample C Male 44.5
Sample D Male 52.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.9
Samples: 4

Max nTPM: 57.4
Min nTPM: 53.1
Sample A Male 53.2
Sample B Male 53.1
Sample C Female 56.0
Sample D Female 57.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
75749420 Antisense, RP_060518_04_E04, Mouse strain C57BL/6J (56 days, male) 1.2
79556595 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.8
79360278 Antisense, RP_071018_01_G09, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.