BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:14.3 nTPM
HPA:14.3 nTPM
GTEx:10.7 nTPM
FANTOM5:11.5 Scaled Tags Per Million
Pig:5.7 nTPM

CAUDATE - Antibody stainingi
Antibody HPA002732
Glial cells High
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.3
2481 Female, age 94, left hemisphere 10.8
1854 Male, age 80, left hemisphere 10.7
1781 Male, age 74, unknown 10.0
2289 Male, age 61, right hemisphere 9.9
2846 Female, age 79, unknown 9.4
2288 Male, age 75, left hemisphere 9.0
2290 Female, age 72, unknown 8.1
1857 Female, age 85, left hemisphere 6.7
Claustrum
nTPM: 11.2
2392 Female, age 94, both hemispheres 12.7
2491 Male, age 75, both hemispheres 12.3
2198 Male, age 80, both hemispheres 11.9
2284 Female, age 91, both hemispheres 11.8
2645 Female, age 72, unknown 11.8
2568 Male, age 61, both hemispheres 11.4
1956 Male, age 74, unknown 11.0
2196 Female, age 79, unknown 10.2
2292 Female, age 85, both hemispheres 7.4
Globus pallidus, externus
nTPM: 11.8
2646 Male, age 61, right hemisphere 14.2
2567 Female, age 72, unknown 12.8
2395 Male, age 75, both hemispheres 12.3
2772 Female, age 79, unknown 10.9
1996 Male, age 80, right hemisphere 8.8
Globus pallidus, internus
nTPM: 10.7
1818 Male, age 74, unknown 11.9
2566 Female, age 72, unknown 11.7
2483 Female, age 94, right hemisphere 11.5
2778 Female, age 91, both hemispheres 10.7
2287 Male, age 75, right hemisphere 9.8
2037 Male, age 80, right hemisphere 9.7
2111 Female, age 85, right hemisphere 9.7
Nucleus accumbens
nTPM: 10.4
2732 Male, age 80, right hemisphere 12.0
1783 Male, age 74, unknown 11.1
2286 Male, age 75, left hemisphere 10.8
2824 Male, age 61, right hemisphere 10.7
1856 Female, age 91, right hemisphere 10.5
2391 Female, age 94, left hemisphere 9.6
2698 Female, age 72, unknown 9.6
1806 Female, age 85, left hemisphere 8.7
Nucleus basalis of Meynert
nTPM: 10.5
2569 Male, age 61, both hemispheres 11.8
2393 Male, age 80, right hemisphere 10.8
2821 Male, age 75, both hemispheres 10.4
2484 Female, age 94, left hemisphere 9.2
Nucleus of the diagonal band
nTPM: 14.3
2029 Male, age 61, right hemisphere 16.3
2775 Male, age 80, right hemisphere 14.9
2195 Female, age 85, both hemispheres 14.1
1812 Female, age 91, both hemispheres 13.5
1979 Male, age 74, unknown 12.7
Olfactory tubercle
nTPM: 14.3
2487 Female, age 94, left hemisphere 15.2
1998 Female, age 91, both hemispheres 14.9
1846 Male, age 80, right hemisphere 14.6
2856 Male, age 75, right hemisphere 12.5
Putamen
nTPM: 9.7
1838 Male, age 80, right hemisphere 11.9
2489 Female, age 72, unknown 10.3
1937 Female, age 91, right hemisphere 10.0
2647 Male, age 75, left hemisphere 10.0
2482 Female, age 94, left hemisphere 9.3
2466 Female, age 79, unknown 8.8
1829 Male, age 74, unknown 7.5
Septal nuclei
nTPM: 13.0
2199 Male, age 80, right hemisphere 15.4
2031 Female, age 72, unknown 14.3
1960 Male, age 74, unknown 13.6
2009 Female, age 91, both hemispheres 13.2
2629 Female, age 94, right hemisphere 12.9
2059 Female, age 85, both hemispheres 12.8
2394 Male, age 61, left hemisphere 8.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.4
Samples: 246

Max nTPM: 26.5
Min nTPM: 5.5
Std nTPM: 2.7
Median nTPM: 9.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 26.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 25.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 19.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 16.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 16.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 15.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 15.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 15.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 15.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 14.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 14.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.7
Samples: 246

Max nTPM: 24.9
Min nTPM: 4.9
Std nTPM: 3.0
Median nTPM: 10.0
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 24.9
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 23.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 21.5
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 21.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 20.5
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 19.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 18.2
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 17.6
GTEX-1192X-0011-R6a-SM-DNZZB 50-59 years, male 17.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 16.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 16.8
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Brain - Putamen (basal ganglia)
Average nTPM: 10.6
Samples: 205

Max nTPM: 29.4
Min nTPM: 4.8
Std nTPM: 3.4
Median nTPM: 10.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 29.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 28.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 22.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 20.9
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 20.2
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 18.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 18.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 17.4
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 17.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 16.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 16.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.5
FF:10164-103B2 76 years, female 11.5
Globus pallidus
Scaled Tags Per Million: 8.3
FF:10175-103C4 60 years, female 11.0
FF:10161-103A8 76 years, female 5.6
Nucleus accumbens
Scaled Tags Per Million: 10.8
FF:10037-101F1 23-56 years, mixed 10.8
Putamen
Scaled Tags Per Million: 7.1
FF:10176-103C5 60 years, female 7.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Caudate
nTPM: 5.1
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.1
Sample A Female 5.8
Sample B Female 5.3
Sample C Male 4.1
Sample D Male 5.3
Putamen
nTPM: 4.9
Samples: 4

Max nTPM: 6.3
Min nTPM: 3.9
Sample A Female 6.3
Sample B Female 5.1
Sample C Male 3.9
Sample D Male 4.3
Septum
nTPM: 5.7
Samples: 4

Max nTPM: 5.9
Min nTPM: 5.4
Sample A Female 5.9
Sample B Female 5.4
Sample C Male 5.5
Sample D Male 5.9
Ventral pallidum
nTPM: 5.3
Samples: 4

Max nTPM: 6.0
Min nTPM: 4.3
Sample A Female 6.0
Sample B Female 5.2
Sample C Male 4.3
Sample D Male 5.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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