BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:44.6 nTPM
HPA:44.6 nTPM
GTEx:60.9 nTPM
FANTOM5:180.8 Scaled Tags Per Million
Pig:78.2 nTPM
Mouse:84.5 nTPM
Allen mouse:11.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA013373
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.0
2289 Male, age 61, right hemisphere 45.9
2290 Female, age 72, unknown 44.4
2846 Female, age 79, unknown 43.9
1781 Male, age 74, unknown 43.6
2288 Male, age 75, left hemisphere 43.4
1857 Female, age 85, left hemisphere 42.7
1854 Male, age 80, left hemisphere 41.7
2481 Female, age 94, left hemisphere 38.7
Claustrum
nTPM: 44.6
2198 Male, age 80, both hemispheres 49.9
2645 Female, age 72, unknown 49.9
2568 Male, age 61, both hemispheres 48.8
2196 Female, age 79, unknown 46.4
2292 Female, age 85, both hemispheres 45.0
1956 Male, age 74, unknown 44.1
2491 Male, age 75, both hemispheres 42.8
2284 Female, age 91, both hemispheres 40.0
2392 Female, age 94, both hemispheres 34.8
Globus pallidus, externus
nTPM: 36.8
2646 Male, age 61, right hemisphere 40.9
2567 Female, age 72, unknown 38.4
2395 Male, age 75, both hemispheres 35.6
2772 Female, age 79, unknown 35.2
1996 Male, age 80, right hemisphere 33.8
Globus pallidus, internus
nTPM: 37.1
2111 Female, age 85, right hemisphere 39.7
2287 Male, age 75, right hemisphere 39.5
2778 Female, age 91, both hemispheres 38.9
2483 Female, age 94, right hemisphere 37.1
2566 Female, age 72, unknown 36.5
1818 Male, age 74, unknown 34.6
2037 Male, age 80, right hemisphere 33.1
Nucleus accumbens
nTPM: 41.7
1783 Male, age 74, unknown 48.2
2824 Male, age 61, right hemisphere 45.1
1806 Female, age 85, left hemisphere 44.1
2286 Male, age 75, left hemisphere 42.7
2698 Female, age 72, unknown 42.1
1856 Female, age 91, right hemisphere 39.8
2391 Female, age 94, left hemisphere 38.2
2732 Male, age 80, right hemisphere 33.6
Nucleus basalis of Meynert
nTPM: 40.2
2821 Male, age 75, both hemispheres 43.8
2569 Male, age 61, both hemispheres 39.3
2393 Male, age 80, right hemisphere 39.0
2484 Female, age 94, left hemisphere 38.8
Nucleus of the diagonal band
nTPM: 41.4
2029 Male, age 61, right hemisphere 46.0
2195 Female, age 85, both hemispheres 42.8
2775 Male, age 80, right hemisphere 41.9
1812 Female, age 91, both hemispheres 40.5
1979 Male, age 74, unknown 35.9
Olfactory tubercle
nTPM: 40.7
2856 Male, age 75, right hemisphere 42.7
2487 Female, age 94, left hemisphere 40.9
1846 Male, age 80, right hemisphere 40.6
1998 Female, age 91, both hemispheres 38.7
Putamen
nTPM: 43.9
2489 Female, age 72, unknown 47.7
2647 Male, age 75, left hemisphere 46.2
1838 Male, age 80, right hemisphere 45.4
2466 Female, age 79, unknown 45.1
1829 Male, age 74, unknown 44.8
2482 Female, age 94, left hemisphere 39.9
1937 Female, age 91, right hemisphere 38.5
Septal nuclei
nTPM: 38.1
1960 Male, age 74, unknown 45.2
2629 Female, age 94, right hemisphere 40.7
2031 Female, age 72, unknown 40.5
2059 Female, age 85, both hemispheres 40.1
2009 Female, age 91, both hemispheres 36.8
2394 Male, age 61, left hemisphere 31.7
2199 Male, age 80, right hemisphere 31.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 60.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 55.6
Samples: 246

Max nTPM: 113.1
Min nTPM: 27.5
Std nTPM: 12.1
Median nTPM: 54.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 113.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 95.9
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 91.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 89.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 86.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 80.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 80.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 80.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 78.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 78.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 77.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 58.7
Samples: 246

Max nTPM: 102.4
Min nTPM: 22.0
Std nTPM: 13.1
Median nTPM: 59.1
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 102.4
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 96.0
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 94.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 91.9
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 89.9
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 88.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 86.7
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 86.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 86.3
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 85.5
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 83.5
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Brain - Putamen (basal ganglia)
Average nTPM: 60.9
Samples: 205

Max nTPM: 99.7
Min nTPM: 29.6
Std nTPM: 11.8
Median nTPM: 59.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 99.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 98.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 97.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 94.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 90.4
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 89.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 88.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 86.2
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 83.7
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 83.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 83.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 180.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 180.8
FF:10164-103B2 76 years, female 180.8
Globus pallidus
Scaled Tags Per Million: 136.0
FF:10161-103A8 76 years, female 178.1
FF:10175-103C4 60 years, female 93.9
Nucleus accumbens
Scaled Tags Per Million: 110.3
FF:10037-101F1 23-56 years, mixed 110.3
Putamen
Scaled Tags Per Million: 129.7
FF:10176-103C5 60 years, female 129.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 78.2
Pig sample Sample description nTPM
Caudate
nTPM: 73.4
Samples: 4

Max nTPM: 102.6
Min nTPM: 53.3
Sample A Female 53.3
Sample B Female 75.8
Sample C Male 102.6
Sample D Male 62.0
Putamen
nTPM: 78.2
Samples: 4

Max nTPM: 118.8
Min nTPM: 52.9
Sample A Female 52.9
Sample B Female 67.4
Sample C Male 118.8
Sample D Male 73.5
Septum
nTPM: 49.3
Samples: 4

Max nTPM: 66.7
Min nTPM: 31.0
Sample A Female 66.7
Sample B Female 52.2
Sample C Male 47.2
Sample D Male 31.0
Ventral pallidum
nTPM: 59.6
Samples: 4

Max nTPM: 70.1
Min nTPM: 52.6
Sample A Female 70.1
Sample B Female 59.3
Sample C Male 52.6
Sample D Male 56.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 84.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 72.8
Samples: 4

Max nTPM: 79.9
Min nTPM: 66.2
Sample A Male 76.6
Sample B Male 79.9
Sample C Female 68.5
Sample D Female 66.2
Septum
nTPM: 84.4
Samples: 4

Max nTPM: 90.1
Min nTPM: 79.8
Sample A Male 83.0
Sample B Male 90.1
Sample C Female 84.8
Sample D Female 79.8
Ventral forebrain
nTPM: 71.4
Samples: 4

Max nTPM: 75.8
Min nTPM: 63.2
Sample A Male 70.6
Sample B Male 75.8
Sample C Female 75.8
Sample D Female 63.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.2
74821558 Antisense, RP_060321_02_A01, Mouse strain C57BL/6J (56 days, male) 11.2
Pallidum
Expression energy: 11.4
74821558 Antisense, RP_060321_02_A01, Mouse strain C57BL/6J (56 days, male) 11.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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