MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:651.5 nTPM
HPA:651.5 nTPM
GTEx:1366.2 nTPM
FANTOM5:9.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 651.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 632.9
2666 Male, age 74, left hemisphere 652.5
1870 Female, age 42, unknown 646.3
2411 Female, age 72, unknown 641.3
2019 Male, age 18, unknown 638.4
2828 Female, age 72, unknown 636.7
2586 Male, age 75, left hemisphere 629.3
1830 Male, age 51, unknown 628.1
1827 Male, age 72, unknown 621.6
2219 Male, age 76, both hemispheres 617.6
1833 Male, age 53, unknown 617.0
Dorsal raphe nucleus
nTPM: 638.1
2750 Male, age 76, both hemispheres 649.7
2298 Female, age 72, unknown 648.4
2016 Female, age 72, unknown 638.2
1828 Male, age 53, unknown 637.8
2047 Male, age 72, unknown 616.4
Inferior colliculus
nTPM: 633.9
2097 Female, age 72, unknown 653.8
1890 Male, age 53, unknown 647.2
1848 Female, age 42, unknown 621.2
2849 Male, age 72, unknown 613.2
Median raphe nucleus
nTPM: 629.3
2220 Male, age 76, midline 629.3
Pedunculopontine tegmental nucleus
nTPM: 636.9
2334 Male, age 80, both hemispheres 652.3
2338 Male, age 61, both hemispheres 638.2
1921 Female, age 85, both hemispheres 620.3
Periaquaductal grey, anterior
nTPM: 636.1
2502 Female, age 75, unknown 667.4
1795 Male, age 51, unknown 620.6
1947 Male, age 18, unknown 620.2
Periaquaductal grey, dorsal
nTPM: 624.1
1840 Male, age 53, unknown 634.0
2464 Female, age 72, unknown 632.1
1831 Male, age 72, unknown 622.0
2850 Male, age 76, both hemispheres 608.4
Periaquaductal grey, lateral
nTPM: 617.6
2053 Male, age 18, unknown 627.6
2140 Male, age 76, both hemispheres 623.1
2272 Male, age 74, both hemispheres 602.2
Pretectal area
nTPM: 623.6
2316 Male, age 76, right hemisphere 659.7
2224 Female, age 72, unknown 636.6
2825 Male, age 18, unknown 631.4
1817 Female, age 42, unknown 627.6
1815 Male, age 53, unknown 625.7
2007 Male, age 72, unknown 624.2
1816 Male, age 51, unknown 622.3
2667 Female, age 75, unknown 610.6
2407 Male, age 75, both hemispheres 609.3
1944 Female, age 72, unknown 608.1
2273 Male, age 74, both hemispheres 604.5
Red nucleus
nTPM: 651.0
2503 Female, age 72, unknown 675.3
1904 Male, age 53, unknown 665.6
1865 Male, age 51, unknown 663.9
1821 Female, age 72, unknown 663.7
2227 Male, age 72, unknown 661.0
2769 Male, age 72, unknown 658.6
2588 Male, age 74, left hemisphere 652.7
1954 Female, age 42, unknown 645.1
2785 Male, age 18, unknown 638.2
2823 Male, age 76, right hemisphere 632.6
2584 Male, age 75, left hemisphere 628.4
2725 Female, age 75, unknown 626.8
Substantia nigra
nTPM: 651.5
1851 Male, age 51, unknown 687.0
2241 Male, age 72, unknown 676.9
2409 Female, age 72, unknown 672.5
2665 Male, age 74, both hemispheres 670.8
2699 Male, age 18, unknown 660.5
1916 Female, age 42, unknown 645.5
2590 Female, age 75, unknown 642.6
1889 Female, age 72, unknown 640.5
1941 Male, age 53, unknown 615.8
2583 Male, age 75, right hemisphere 602.6
Superior colliculus
nTPM: 639.7
2587 Male, age 74, left hemisphere 657.1
1995 Male, age 72, unknown 656.7
2668 Female, age 75, unknown 653.3
1913 Female, age 42, unknown 653.1
1796 Male, age 53, unknown 641.8
2087 Female, age 72, unknown 637.6
2261 Male, age 18, unknown 627.9
1895 Male, age 76, right hemisphere 625.0
1839 Male, age 51, unknown 623.3
2664 Male, age 75, both hemispheres 621.4
Ventral tegmental area
nTPM: 645.4
1915 Female, age 42, unknown 665.8
2223 Female, age 72, unknown 657.1
2021 Male, age 53, unknown 651.5
2410 Female, age 72, unknown 641.1
1942 Male, age 51, unknown 637.8
2218 Male, age 76, both hemispheres 618.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1366.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1366.2
Samples: 139

Max nTPM: 4314.3
Min nTPM: 457.1
Std nTPM: 538.7
Median nTPM: 1241.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 4314.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 3135.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2954.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2854.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2610.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2458.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2408.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2330.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2284.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 2163.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 2065.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.9
FF:10158-103A5 76 years, female 9.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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