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HLA-DRB5
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:184.7 nTPM
HPA:184.7 nTPM
GTEx:94.6 nTPM
FANTOM5:45.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA043151
Glandular cells Not detected


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 184.7
overview
Male, age 65
Small intestine sample 232
nTPM: 39.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 304.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 3.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 391

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 94.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 94.6
Samples: 187

Max nTPM: 644.2
Min nTPM: 4.5
Std nTPM: 88.7
Median nTPM: 70.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 644.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 453.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 379.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 333.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 330.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 329.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 305.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 302.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 278.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 276.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 249.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 248.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 239.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 229.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 219.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 206.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 205.9
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 205.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 201.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 197.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 194.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 188.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 187.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 187.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 183.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 182.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 179.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 178.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 176.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 166.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 164.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 163.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 157.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 156.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 151.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 150.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 142.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 135.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 134.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 134.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 133.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 133.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 129.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 128.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 127.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 125.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 124.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 123.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 122.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 119.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 117.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 111.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 111.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 110.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 107.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 105.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 103.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 101.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 98.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 98.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 96.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 95.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 94.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 94.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 94.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 91.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 89.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 89.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 89.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 88.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 88.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 86.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 86.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 86.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 86.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 84.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 84.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 82.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 81.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 81.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 80.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 80.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 79.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 79.1
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 78.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 76.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 75.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 75.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 73.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 73.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 72.5
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 72.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 71.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 70.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 70.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 69.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 68.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 66.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 65.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 64.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 64.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 62.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 62.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 61.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 60.8
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 60.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 60.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 59.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 56.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 55.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 54.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 53.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 53.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 53.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 53.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 52.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 51.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 51.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 50.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 50.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 50.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 49.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 48.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 46.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 46.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 45.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 44.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 44.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 43.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 43.3
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 43.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 42.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 42.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 41.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 41.1
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 40.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 40.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 40.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 39.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 37.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 37.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 37.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 35.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 34.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 34.5
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 34.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 33.9
GTEX-1192X-2526-SM-59868 50-59 years, male 32.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 32.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 31.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 31.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 30.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 30.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 27.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 25.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 25.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 25.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 22.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 21.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 21.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 21.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 20.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 20.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 19.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 17.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 17.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 17.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 15.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 15.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 15.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 15.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 14.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 14.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 14.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 13.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 12.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 11.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 11.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 11.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 10.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 9.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 8.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 7.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 6.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 6.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 6.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 4.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 45.2
FF:10024-101D6 15,40,85 years, mixed 45.2

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