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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:264.4 nTPM
GTEx:264.4 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:158.4 nTPM
Mouse:913.0 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 264.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 264.4
Samples: 105

Max nTPM: 487.5
Min nTPM: 113.1
Std nTPM: 78.2
Median nTPM:
415_1 77 years, female 487.5
466_1 57 years, female 484.7
217_1 76 years, male 421.8
246_1 77 years, male 420.5
414_1 84 years, female 411.7
490_1 67 years, female 411.0
32_1 67 years, male 404.7
162_1 79 years, female 403.3
149_1 88 years, male 402.1
126_1 63 years, male 395.5
526_1 61 years, male 383.9
468_1 89 years, male 375.4
389_1 86 years, female 360.4
266_1 85 years, male 359.8
499_1 55 years, female 357.4
265_1 87 years, male 352.8
142_1 61 years, female 351.4
81_1 67 years, male 347.7
153_1 70 years, female 346.5
229_1 69 years, female 333.0
43_1 64 years, female 328.3
413_1 59 years, female 318.9
324_1 76 years, male 316.2
9_1 66 years, female 309.3
89_1 63 years, male 306.9
495_1 57 years, female 302.1
189_1 76 years, male 296.7
18_1 88 years, male 294.9
518_1 75 years, female 293.9
315_1 62 years, female 293.6
425_1 59 years, female 293.5
172_1 72 years, female 292.6
117_1 61 years, male 288.2
35_1 74 years, female 287.6
251_1 78 years, male 285.6
377_1 82 years, female 284.2
491_1 89 years, female 284.0
254_1 77 years, female 282.6
394_1 75 years, female 280.8
115_1 83 years, male 280.4
405_1 91 years, male 279.4
355_1 70 years, female 278.9
307_1 66 years, female 272.3
313_1 79 years, female 270.3
352_1 62 years, male 268.6
375_1 74 years, female 263.7
6_1 73 years, female 262.5
480_1 63 years, male 258.0
404_1 82 years, female 257.8
319_1 81 years, male 257.6
376_1 75 years, female 257.6
321_1 62 years, female 256.3
384_1 83 years, male 255.8
503_1 68 years, male 251.8
291_1 76 years, male 250.8
237_1 82 years, male 250.6
335_1 73 years, female 249.0
447_1 81 years, male 246.3
517_1 88 years, male 245.8
292_1 71 years, male 244.5
17_1 71 years, male 244.2
137_1 83 years, male 243.5
386_1 76 years, male 243.1
311_1 78 years, male 242.4
286_1 68 years, female 242.2
139_1 64 years, female 239.4
120_1 70 years, female 239.2
396_1 62 years, male 235.1
348_1 84 years, male 232.2
243_1 75 years, male 228.9
42_1 85 years, male 227.6
109_1 81 years, female 226.5
288_1 66 years, female 226.4
2_1 77 years, female 221.9
347_1 72 years, male 218.5
293_1 68 years, female 218.1
145_1 84 years, male 217.4
119_1 70 years, female 215.0
406_1 79 years, male 214.7
350_1 84 years, female 213.1
354_1 81 years, female 209.8
163_1 78 years, male 204.0
318_1 68 years, male 203.5
356_1 87 years, female 202.7
320_1 89 years, female 199.6
349_1 83 years, male 197.8
379_1 60 years, male 194.2
177_1 74 years, male 187.7
501_1 88 years, male 182.1
99_1 64 years, male 181.7
316_1 62 years, male 179.2
264_1 73 years, female 176.3
4_1 88 years, female 174.1
308_1 70 years, female 170.6
353_1 82 years, female 166.4
173_1 67 years, male 157.4
314_1 67 years, male 155.8
218_1 71 years, female 154.5
322_1 76 years, male 151.4
317_1 60 years, male 149.9
351_1 91 years, male 149.6
295_1 61 years, female 144.9
41_1 94 years, female 135.7
506_1 65 years, male 124.0
452_1 88 years, female 113.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 18.1
FF:10030-101E3 24-65 years, mixed 18.1

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 158.4
Pig sample Sample description nTPM
Retina
nTPM: 158.4
Samples: 4

Max nTPM: 177.6
Min nTPM: 142.7
Sample A Female 149.4
Sample B Female 142.7
Sample C Male 177.6
Sample D Male 163.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 913.0
Mouse sample Sample description nTPM
Retina
nTPM: 913.1
Samples: 4

Max nTPM: 938.9
Min nTPM: 887.9
Sample A Male 917.7
Sample B Male 907.7
Sample C Female 938.9
Sample D Female 887.9

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by the Knut & Alice Wallenberg Foundation.