MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA:12.5 nTPM
GTEx:64.5 nTPM
FANTOM5:163.9 Scaled Tags Per Million
Pig:95.9 nTPM
Mouse:113.8 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.3
2019 Male, age 18, unknown 13.8
1827 Male, age 72, unknown 13.6
2411 Female, age 72, unknown 12.9
2586 Male, age 75, left hemisphere 12.5
1833 Male, age 53, unknown 12.3
1830 Male, age 51, unknown 12.0
1870 Female, age 42, unknown 12.0
2828 Female, age 72, unknown 12.0
2666 Male, age 74, left hemisphere 11.1
2219 Male, age 76, both hemispheres 10.6
Dorsal raphe nucleus
nTPM: 12.5
2298 Female, age 72, unknown 13.2
2016 Female, age 72, unknown 12.9
1828 Male, age 53, unknown 12.3
2047 Male, age 72, unknown 12.0
2750 Male, age 76, both hemispheres 11.9
Inferior colliculus
nTPM: 12.0
2097 Female, age 72, unknown 13.0
1890 Male, age 53, unknown 12.0
1848 Female, age 42, unknown 11.9
2849 Male, age 72, unknown 11.3
Median raphe nucleus
nTPM: 10.4
2220 Male, age 76, midline 10.4
Pedunculopontine tegmental nucleus
nTPM: 11.6
2334 Male, age 80, both hemispheres 12.0
1921 Female, age 85, both hemispheres 11.6
2338 Male, age 61, both hemispheres 11.1
Periaquaductal grey, anterior
nTPM: 12.5
2502 Female, age 75, unknown 13.5
1947 Male, age 18, unknown 12.5
1795 Male, age 51, unknown 11.6
Periaquaductal grey, dorsal
nTPM: 12.0
1840 Male, age 53, unknown 13.0
1831 Male, age 72, unknown 12.4
2464 Female, age 72, unknown 11.8
2850 Male, age 76, both hemispheres 10.9
Periaquaductal grey, lateral
nTPM: 11.9
2140 Male, age 76, both hemispheres 12.6
2272 Male, age 74, both hemispheres 12.6
2053 Male, age 18, unknown 10.4
Pretectal area
nTPM: 12.1
2273 Male, age 74, both hemispheres 13.5
2407 Male, age 75, both hemispheres 13.1
2316 Male, age 76, right hemisphere 13.0
2007 Male, age 72, unknown 12.6
1815 Male, age 53, unknown 11.9
1817 Female, age 42, unknown 11.9
1944 Female, age 72, unknown 11.8
2825 Male, age 18, unknown 11.8
2224 Female, age 72, unknown 11.6
1816 Male, age 51, unknown 11.5
2667 Female, age 75, unknown 10.8
Red nucleus
nTPM: 12.1
1821 Female, age 72, unknown 12.8
2503 Female, age 72, unknown 12.5
2584 Male, age 75, left hemisphere 12.5
2588 Male, age 74, left hemisphere 12.4
2769 Male, age 72, unknown 12.4
1865 Male, age 51, unknown 12.3
2227 Male, age 72, unknown 12.2
1904 Male, age 53, unknown 12.1
2785 Male, age 18, unknown 12.1
1954 Female, age 42, unknown 11.9
2823 Male, age 76, right hemisphere 11.7
2725 Female, age 75, unknown 10.6
Substantia nigra
nTPM: 11.7
2590 Female, age 75, unknown 13.9
2583 Male, age 75, right hemisphere 13.2
1851 Male, age 51, unknown 12.1
1889 Female, age 72, unknown 11.9
1941 Male, age 53, unknown 11.7
2409 Female, age 72, unknown 11.3
1916 Female, age 42, unknown 11.2
2665 Male, age 74, both hemispheres 10.8
2699 Male, age 18, unknown 10.7
2241 Male, age 72, unknown 10.1
Superior colliculus
nTPM: 12.2
2261 Male, age 18, unknown 14.1
2664 Male, age 75, both hemispheres 13.2
1995 Male, age 72, unknown 12.8
1839 Male, age 51, unknown 12.4
2668 Female, age 75, unknown 12.4
2087 Female, age 72, unknown 12.0
1895 Male, age 76, right hemisphere 11.9
1913 Female, age 42, unknown 11.9
2587 Male, age 74, left hemisphere 11.5
1796 Male, age 53, unknown 10.2
Ventral tegmental area
nTPM: 11.0
2021 Male, age 53, unknown 12.3
1942 Male, age 51, unknown 11.4
1915 Female, age 42, unknown 11.3
2223 Female, age 72, unknown 11.0
2410 Female, age 72, unknown 10.9
2218 Male, age 76, both hemispheres 9.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.5
Samples: 139

Max nTPM: 176.6
Min nTPM: 32.0
Std nTPM: 18.5
Median nTPM: 61.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 176.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 118.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 104.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 103.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 98.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 94.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 93.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 91.4
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 91.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 90.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 90.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 163.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 163.9
FF:10158-103A5 76 years, female 163.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 95.9
Pig sample Sample description nTPM
Midbrain
nTPM: 95.9
Samples: 4

Max nTPM: 121.3
Min nTPM: 81.1
Sample A Female 121.3
Sample B Female 93.6
Sample C Male 81.1
Sample D Male 87.7
Periaqueductal gray
nTPM: 89.5
Samples: 3

Max nTPM: 90.4
Min nTPM: 88.4
Sample B Female 90.4
Sample C Male 89.7
Sample D Male 88.4
Substantia nigra
nTPM: 93.8
Samples: 4

Max nTPM: 102.8
Min nTPM: 85.4
Sample A Female 99.8
Sample B Female 87.1
Sample C Male 85.4
Sample D Male 102.8
Superior colliculi
nTPM: 89.5
Samples: 4

Max nTPM: 97.0
Min nTPM: 80.9
Sample A Female 97.0
Sample B Female 87.4
Sample C Male 80.9
Sample D Male 92.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.8
Samples: 4

Max nTPM: 116.8
Min nTPM: 111.5
Sample A Male 114.8
Sample B Male 111.5
Sample C Female 116.8
Sample D Female 112.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
68148739 Antisense, RP_041116_02_A11, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.