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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:5.6 nTPM
GTEx:16.3 nTPM
FANTOM5:5.2 Scaled Tags Per Million
Pig:20.2 nTPM

PUTAMEN - Annotated protein expression
Pending normal tissue analysis

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 5.6
Sample id Sample description nTPM
Putamen
nTPM: 5.6
2466 Female, age 79, unknown 9.5
2489 Female, age 72, unknown 6.3
1829 Male, age 74, unknown 6.0
2647 Male, age 75, left hemisphere 5.8
2482 Female, age 94, left hemisphere 4.2
1937 Female, age 91, right hemisphere 4.1
1838 Male, age 80, right hemisphere 2.9

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.3
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 16.3
Samples: 205

Max nTPM: 195.0
Min nTPM: 1.0
Std nTPM: 24.5
Median nTPM: 8.6
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 195.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 134.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 116.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 115.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 103.7
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 96.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 93.8
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 92.2
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 81.6
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 77.6
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 71.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 64.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 52.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 50.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 43.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 34.9
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 32.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 31.1
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 30.6
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 30.3
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 30.2
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 27.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 27.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 26.4
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 26.3
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 25.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 22.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 22.3
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 21.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 21.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 21.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 21.0
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 20.4
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 19.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 19.7
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 19.7
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 19.5
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 19.2
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 19.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 18.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 18.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 18.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 17.9
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 17.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 16.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 16.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 15.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 15.9
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 15.8
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 15.3
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 15.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 15.0
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 14.8
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 14.5
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 14.3
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 14.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 14.1
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 14.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 13.8
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 13.5
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 13.3
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 13.2
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 13.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 13.0
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 12.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 12.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 12.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 12.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 12.2
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 12.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 11.9
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 11.7
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 11.6
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 11.6
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 11.3
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 11.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 11.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 11.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 10.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 10.4
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 10.2
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 10.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 10.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 10.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 9.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 9.6
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 9.4
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 9.3
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 9.1
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 9.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 9.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 9.0
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 9.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 8.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 8.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 8.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 8.8
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 8.8
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 8.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 8.7
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 8.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 8.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 8.6
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 8.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 8.5
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 8.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 8.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 8.2
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 8.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 8.1
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 8.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 8.1
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 8.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 8.1
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 8.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 7.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 7.9
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 7.9
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 7.8
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 7.8
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 7.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 7.7
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 7.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 7.6
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 7.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 7.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 7.5
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 7.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 7.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 7.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 7.1
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 6.9
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 6.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 6.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 6.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 6.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 6.8
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 6.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 6.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 6.6
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 6.6
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 6.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 6.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 6.6
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 6.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 6.5
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 6.5
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 6.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 6.4
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 6.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 6.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 6.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 5.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 5.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 5.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 5.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 5.7
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 5.6
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 5.4
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 5.4
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 5.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 5.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 5.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 4.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 4.8
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 4.8
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 4.8
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 4.7
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 4.6
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 4.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 4.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 4.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 4.5
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 4.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 4.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 4.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 4.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 4.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 4.1
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 4.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 4.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 4.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 4.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 4.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 3.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 3.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 3.8
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 3.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 3.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 3.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 3.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 3.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 3.3
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 3.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 3.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 3.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 3.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 2.9
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 2.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 2.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 2.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 2.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 1.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 1.9
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 1.0
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 5.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 5.2
FF:10176-103C5 60 years, female 5.2

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 20.2
Pig sample Sample description nTPM
Putamen
nTPM: 20.2
Samples: 4

Max nTPM: 33.0
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 19.6
Sample C Male 24.8
Sample D Male 33.0

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