BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:62.8 nTPM
HPA:62.8 nTPM
GTEx:64.3 nTPM
FANTOM5:127.6 Scaled Tags Per Million
Pig:59.5 nTPM
Mouse:109.6 nTPM
Allen mouse:3.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA036485
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.6
2288 Male, age 75, left hemisphere 60.0
2481 Female, age 94, left hemisphere 56.8
2290 Female, age 72, unknown 55.4
1857 Female, age 85, left hemisphere 55.3
2846 Female, age 79, unknown 55.2
1854 Male, age 80, left hemisphere 54.6
1781 Male, age 74, unknown 52.6
2289 Male, age 61, right hemisphere 47.4
Claustrum
nTPM: 51.5
2198 Male, age 80, both hemispheres 56.1
2392 Female, age 94, both hemispheres 55.7
1956 Male, age 74, unknown 54.6
2568 Male, age 61, both hemispheres 52.3
2196 Female, age 79, unknown 52.0
2491 Male, age 75, both hemispheres 51.2
2284 Female, age 91, both hemispheres 49.7
2292 Female, age 85, both hemispheres 46.5
2645 Female, age 72, unknown 45.7
Globus pallidus, externus
nTPM: 49.9
2772 Female, age 79, unknown 59.9
2395 Male, age 75, both hemispheres 55.1
1996 Male, age 80, right hemisphere 53.1
2646 Male, age 61, right hemisphere 42.2
2567 Female, age 72, unknown 39.3
Globus pallidus, internus
nTPM: 50.7
2287 Male, age 75, right hemisphere 59.1
2778 Female, age 91, both hemispheres 54.0
2483 Female, age 94, right hemisphere 53.6
1818 Male, age 74, unknown 53.3
2037 Male, age 80, right hemisphere 49.3
2111 Female, age 85, right hemisphere 43.0
2566 Female, age 72, unknown 42.6
Nucleus accumbens
nTPM: 55.8
2286 Male, age 75, left hemisphere 62.3
1856 Female, age 91, right hemisphere 61.9
1806 Female, age 85, left hemisphere 55.3
2391 Female, age 94, left hemisphere 55.1
2698 Female, age 72, unknown 55.1
2824 Male, age 61, right hemisphere 53.9
1783 Male, age 74, unknown 52.3
2732 Male, age 80, right hemisphere 50.2
Nucleus basalis of Meynert
nTPM: 48.9
2821 Male, age 75, both hemispheres 51.8
2393 Male, age 80, right hemisphere 51.2
2484 Female, age 94, left hemisphere 49.5
2569 Male, age 61, both hemispheres 43.1
Nucleus of the diagonal band
nTPM: 62.8
2775 Male, age 80, right hemisphere 67.4
1812 Female, age 91, both hemispheres 66.0
2195 Female, age 85, both hemispheres 64.4
2029 Male, age 61, right hemisphere 58.4
1979 Male, age 74, unknown 57.7
Olfactory tubercle
nTPM: 59.4
1846 Male, age 80, right hemisphere 62.6
2487 Female, age 94, left hemisphere 60.6
1998 Female, age 91, both hemispheres 60.5
2856 Male, age 75, right hemisphere 53.6
Putamen
nTPM: 51.5
2466 Female, age 79, unknown 58.2
1838 Male, age 80, right hemisphere 55.7
1937 Female, age 91, right hemisphere 55.1
2482 Female, age 94, left hemisphere 53.1
1829 Male, age 74, unknown 51.3
2647 Male, age 75, left hemisphere 44.0
2489 Female, age 72, unknown 43.4
Septal nuclei
nTPM: 59.2
2031 Female, age 72, unknown 68.4
1960 Male, age 74, unknown 68.2
2629 Female, age 94, right hemisphere 62.4
2009 Female, age 91, both hemispheres 60.9
2059 Female, age 85, both hemispheres 54.7
2199 Male, age 80, right hemisphere 50.1
2394 Male, age 61, left hemisphere 50.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 64.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 56.9
Samples: 246

Max nTPM: 112.2
Min nTPM: 30.4
Std nTPM: 12.4
Median nTPM: 55.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 112.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 107.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 103.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 101.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 97.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 97.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 91.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 89.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 89.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 82.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 81.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 64.3
Samples: 246

Max nTPM: 104.4
Min nTPM: 35.0
Std nTPM: 12.4
Median nTPM: 63.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 104.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 102.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 101.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 95.8
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 94.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 92.4
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 91.4
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 90.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 90.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 88.3
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 88.3
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Brain - Putamen (basal ganglia)
Average nTPM: 55.2
Samples: 205

Max nTPM: 90.9
Min nTPM: 31.5
Std nTPM: 10.2
Median nTPM: 54.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 90.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 90.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 86.4
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 81.1
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 80.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 78.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 78.0
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 77.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 76.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 76.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 75.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 127.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 89.0
FF:10164-103B2 76 years, female 89.0
Globus pallidus
Scaled Tags Per Million: 75.7
FF:10175-103C4 60 years, female 99.4
FF:10161-103A8 76 years, female 52.0
Nucleus accumbens
Scaled Tags Per Million: 85.8
FF:10037-101F1 23-56 years, mixed 85.8
Putamen
Scaled Tags Per Million: 127.6
FF:10176-103C5 60 years, female 127.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 59.5
Pig sample Sample description nTPM
Caudate
nTPM: 59.5
Samples: 4

Max nTPM: 66.8
Min nTPM: 52.8
Sample A Female 57.6
Sample B Female 60.9
Sample C Male 66.8
Sample D Male 52.8
Putamen
nTPM: 57.6
Samples: 4

Max nTPM: 75.6
Min nTPM: 47.7
Sample A Female 47.7
Sample B Female 49.4
Sample C Male 75.6
Sample D Male 57.6
Septum
nTPM: 54.6
Samples: 4

Max nTPM: 58.8
Min nTPM: 50.3
Sample A Female 58.8
Sample B Female 50.3
Sample C Male 58.6
Sample D Male 50.6
Ventral pallidum
nTPM: 53.4
Samples: 4

Max nTPM: 59.8
Min nTPM: 47.4
Sample A Female 52.2
Sample B Female 54.0
Sample C Male 59.8
Sample D Male 47.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 109.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 109.6
Samples: 4

Max nTPM: 121.3
Min nTPM: 101.1
Sample A Male 110.7
Sample B Male 105.2
Sample C Female 101.1
Sample D Female 121.3
Septum
nTPM: 108.9
Samples: 4

Max nTPM: 116.1
Min nTPM: 102.1
Sample A Male 103.3
Sample B Male 114.0
Sample C Female 116.1
Sample D Female 102.1
Ventral forebrain
nTPM: 100.7
Samples: 4

Max nTPM: 114.2
Min nTPM: 93.2
Sample A Male 94.4
Sample B Male 101.0
Sample C Female 114.2
Sample D Female 93.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.6
67765696 Antisense, RP_040916_01_C09, Mouse strain C57BL/6J (56 days, male) 3.6
Pallidum
Expression energy: 3.6
67765696 Antisense, RP_040916_01_C09, Mouse strain C57BL/6J (56 days, male) 3.6

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