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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:429.9 nTPM
HPA:429.9 nTPM
GTEx:685.4 nTPM
FANTOM5:2130.9 Scaled Tags Per Million
Pig:861.4 nTPM
Mouse:1577.6 nTPM
Allen mouse:21.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 429.9
Sample id Sample description nTPM
Amygdala
nTPM: 375.3
2814 Male, age 76, right hemisphere 520.5
2514 Male, age 75, right hemisphere 352.0
1987 Female, age 91, left hemisphere 343.5
2517 Female, age 94, left hemisphere 340.1
2695 Female, age 67, right hemisphere 320.6
Basal amygdala
nTPM: 396.2
2243 Female, age 91, right hemisphere 500.2
2110 Male, age 80, left hemisphere 421.6
1955 Male, age 76, both hemispheres 410.8
2685 Female, age 94, left hemisphere 379.1
2609 Male, age 75, right hemisphere 370.0
2827 Female, age 67, right hemisphere 295.4
Central amygdala
nTPM: 382.4
1905 Male, age 76, both hemispheres 435.8
2826 Female, age 94, left hemisphere 424.3
2239 Male, age 80, left hemisphere 405.7
2515 Male, age 75, right hemisphere 326.1
2701 Female, age 91, right hemisphere 320.1
Corticomedial amygdala
nTPM: 429.9
2829 Male, age 80, left hemisphere 548.8
2242 Female, age 91, right hemisphere 520.6
2240 Male, age 76, both hemispheres 479.6
2428 Male, age 75, right hemisphere 394.0
2429 Female, age 94, left hemisphere 372.5
2535 Female, age 67, right hemisphere 263.8
Lateral amygdala
nTPM: 337.3
1883 Male, age 76, both hemispheres 441.5
2534 Female, age 94, left hemisphere 412.9
2516 Male, age 75, right hemisphere 344.8
2830 Female, age 67, right hemisphere 292.6
2255 Female, age 91, right hemisphere 269.6
2256 Male, age 80, left hemisphere 262.6
Stria terminalis, bed nucleus
nTPM: 428.0
1974 Female, age 91, both hemispheres 553.3
2486 Female, age 94, both hemispheres 474.3
2201 Male, age 74, unknown 256.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 685.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 685.4
Samples: 152

Max nTPM: 1706.6
Min nTPM: 246.4
Std nTPM: 276.4
Median nTPM: 641.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1706.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1652.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1508.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1482.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1236.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1235.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1225.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1199.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1117.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1095.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1092.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1085.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1065.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1049.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1038.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1030.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1023.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1006.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1003.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 981.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 976.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 975.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 967.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 946.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 937.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 933.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 923.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 919.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 916.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 915.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 903.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 896.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 888.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 884.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 883.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 883.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 864.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 862.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 861.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 857.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 855.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 852.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 852.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 845.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 845.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 832.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 825.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 817.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 803.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 779.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 766.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 761.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 753.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 749.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 735.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 731.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 730.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 725.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 720.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 718.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 710.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 707.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 703.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 697.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 694.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 684.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 680.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 680.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 677.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 673.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 666.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 653.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 652.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 651.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 644.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 643.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 639.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 614.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 613.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 607.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 595.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 593.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 593.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 585.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 583.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 582.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 579.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 576.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 574.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 574.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 571.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 555.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 555.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 554.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 552.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 542.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 539.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 535.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 528.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 527.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 525.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 524.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 524.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 521.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 517.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 513.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 506.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 505.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 502.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 501.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 499.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 498.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 494.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 490.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 480.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 480.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 476.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 472.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 461.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 447.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 445.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 439.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 436.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 435.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 433.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 416.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 415.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 414.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 411.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 406.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 405.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 405.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 398.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 391.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 391.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 386.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 380.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 372.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 367.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 366.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 349.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 348.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 348.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 348.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 344.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 342.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 337.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 319.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 306.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 252.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 247.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 246.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 2130.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 2130.9
FF:10151-102I7 76 years, female 2130.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 861.4
Pig sample Sample description nTPM
Amygdala
nTPM: 861.4
Samples: 4

Max nTPM: 1129.2
Min nTPM: 750.9
Sample A Female 1129.2
Sample B Female 750.9
Sample C Male 802.7
Sample D Male 762.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1577.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 1577.6
Samples: 4

Max nTPM: 1771.1
Min nTPM: 1441.6
Sample A Male 1441.6
Sample B Male 1568.8
Sample C Female 1771.1
Sample D Female 1528.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 21.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.9
179 Antisense, RP_Baylor_102652, Mouse strain C57BL/6J (56 days, male) 21.9
180 Antisense, RP_Baylor_102652, Mouse strain C57BL/6J (56 days, male) 15.5

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