MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:115346.3 nTPM
HPA:115346.3 nTPM
GTEx:132538.5 nTPM
Pig:55324.6 nTPM
Mouse:30853.7 nTPM
Allen mouse:22.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 115346.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 109705.7
2586 Male, age 75, left hemisphere 123929.7
2219 Male, age 76, both hemispheres 121871.5
2828 Female, age 72, unknown 115417.8
2666 Male, age 74, left hemisphere 113271.2
1833 Male, age 53, unknown 108948.9
1870 Female, age 42, unknown 107590.2
1830 Male, age 51, unknown 106431.5
2019 Male, age 18, unknown 103060.2
1827 Male, age 72, unknown 100787.0
2411 Female, age 72, unknown 95748.9
Dorsal raphe nucleus
nTPM: 100401.0
1828 Male, age 53, unknown 108115.2
2047 Male, age 72, unknown 102526.6
2750 Male, age 76, both hemispheres 100966.7
2016 Female, age 72, unknown 98563.0
2298 Female, age 72, unknown 91833.7
Inferior colliculus
nTPM: 105825.9
2849 Male, age 72, unknown 115718.0
1890 Male, age 53, unknown 108283.1
1848 Female, age 42, unknown 103686.5
2097 Female, age 72, unknown 95616.2
Median raphe nucleus
nTPM: 115346.3
2220 Male, age 76, midline 115346.3
Pedunculopontine tegmental nucleus
nTPM: 106454.3
2334 Male, age 80, both hemispheres 113436.3
2338 Male, age 61, both hemispheres 106536.2
1921 Female, age 85, both hemispheres 99390.3
Periaquaductal grey, anterior
nTPM: 100205.2
2502 Female, age 75, unknown 103536.7
1795 Male, age 51, unknown 98972.8
1947 Male, age 18, unknown 98106.2
Periaquaductal grey, dorsal
nTPM: 103271.0
2850 Male, age 76, both hemispheres 114082.4
1831 Male, age 72, unknown 102209.3
2464 Female, age 72, unknown 99228.4
1840 Male, age 53, unknown 97564.1
Periaquaductal grey, lateral
nTPM: 98098.3
2140 Male, age 76, both hemispheres 100024.2
2053 Male, age 18, unknown 100023.9
2272 Male, age 74, both hemispheres 94246.8
Pretectal area
nTPM: 106690.2
1944 Female, age 72, unknown 118192.8
1817 Female, age 42, unknown 117547.9
1816 Male, age 51, unknown 116677.7
2667 Female, age 75, unknown 115872.2
1815 Male, age 53, unknown 111059.3
2007 Male, age 72, unknown 110507.8
2825 Male, age 18, unknown 103298.2
2407 Male, age 75, both hemispheres 98851.1
2224 Female, age 72, unknown 95377.4
2316 Male, age 76, right hemisphere 93333.0
2273 Male, age 74, both hemispheres 92874.6
Red nucleus
nTPM: 109369.0
2588 Male, age 74, left hemisphere 116116.4
2503 Female, age 72, unknown 114567.5
2584 Male, age 75, left hemisphere 112167.0
1954 Female, age 42, unknown 111702.1
2823 Male, age 76, right hemisphere 111267.2
2785 Male, age 18, unknown 110976.3
1865 Male, age 51, unknown 110226.5
2227 Male, age 72, unknown 106878.7
2769 Male, age 72, unknown 106184.4
1904 Male, age 53, unknown 105865.7
1821 Female, age 72, unknown 103307.0
2725 Female, age 75, unknown 103169.0
Substantia nigra
nTPM: 112766.2
2665 Male, age 74, both hemispheres 148173.7
2699 Male, age 18, unknown 122410.7
1916 Female, age 42, unknown 117484.9
1889 Female, age 72, unknown 111424.1
1941 Male, age 53, unknown 107944.9
2583 Male, age 75, right hemisphere 106989.1
2241 Male, age 72, unknown 105503.3
1851 Male, age 51, unknown 103361.5
2409 Female, age 72, unknown 102250.9
2590 Female, age 75, unknown 102118.6
Superior colliculus
nTPM: 104756.4
2664 Male, age 75, both hemispheres 114476.7
2087 Female, age 72, unknown 110742.1
2587 Male, age 74, left hemisphere 106709.1
1913 Female, age 42, unknown 104988.9
2668 Female, age 75, unknown 103846.4
1839 Male, age 51, unknown 102082.7
1895 Male, age 76, right hemisphere 101739.8
1995 Male, age 72, unknown 101616.2
2261 Male, age 18, unknown 100701.9
1796 Male, age 53, unknown 100659.7
Ventral tegmental area
nTPM: 106269.7
2218 Male, age 76, both hemispheres 116889.2
2223 Female, age 72, unknown 108129.9
1942 Male, age 51, unknown 106357.4
1915 Female, age 42, unknown 104114.9
2410 Female, age 72, unknown 101069.0
2021 Male, age 53, unknown 101057.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 132538.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132538.5
Samples: 139

Max nTPM: 435093.3
Min nTPM: 19971.6
Std nTPM: 81032.8
Median nTPM: 104262.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 435093.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 425248.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 397242.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 351134.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 346770.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 284070.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 283243.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 282589.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 270728.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 266531.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 265441.6
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MIDBRAIN - Pig RNA-seqi
Average nTPM 55324.6
Pig sample Sample description nTPM
Midbrain
nTPM: 55324.6
Samples: 4

Max nTPM: 69977.4
Min nTPM: 41916.2
Sample A Female 41916.2
Sample B Female 69977.4
Sample C Male 63677.6
Sample D Male 45727.2
Periaqueductal gray
nTPM: 38264.8
Samples: 3

Max nTPM: 41181.1
Min nTPM: 33002.0
Sample B Female 40611.3
Sample C Male 41181.1
Sample D Male 33002.0
Substantia nigra
nTPM: 46051.5
Samples: 4

Max nTPM: 64631.2
Min nTPM: 29966.4
Sample A Female 64631.2
Sample B Female 38590.9
Sample C Male 51017.5
Sample D Male 29966.4
Superior colliculi
nTPM: 50619.4
Samples: 4

Max nTPM: 68452.8
Min nTPM: 20027.6
Sample A Female 59887.7
Sample B Female 20027.6
Sample C Male 68452.8
Sample D Male 54109.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30853.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 30853.7
Samples: 4

Max nTPM: 31933.1
Min nTPM: 29793.2
Sample A Male 31933.1
Sample B Male 30088.4
Sample C Female 31600.2
Sample D Female 29793.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.1
74357773 Antisense, RP_051219_04_A07, Mouse strain C57BL/6J (56 days, male) 22.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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