BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:51.2 nTPM
HPA:51.2 nTPM
GTEx:34.4 nTPM
FANTOM5:111.5 Scaled Tags Per Million
Pig:41.9 nTPM
Mouse:67.8 nTPM
Allen mouse:12.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA034488
Glial cells Low
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 51.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 49.4
2846 Female, age 79, unknown 55.1
2290 Female, age 72, unknown 50.8
1781 Male, age 74, unknown 50.6
1857 Female, age 85, left hemisphere 50.3
2289 Male, age 61, right hemisphere 49.2
1854 Male, age 80, left hemisphere 48.7
2288 Male, age 75, left hemisphere 48.3
2481 Female, age 94, left hemisphere 41.9
Claustrum
nTPM: 48.1
2568 Male, age 61, both hemispheres 54.7
2645 Female, age 72, unknown 51.7
2196 Female, age 79, unknown 49.6
2284 Female, age 91, both hemispheres 48.9
1956 Male, age 74, unknown 47.7
2292 Female, age 85, both hemispheres 46.8
2198 Male, age 80, both hemispheres 45.7
2491 Male, age 75, both hemispheres 45.3
2392 Female, age 94, both hemispheres 42.5
Globus pallidus, externus
nTPM: 41.0
2646 Male, age 61, right hemisphere 46.0
2567 Female, age 72, unknown 42.9
2395 Male, age 75, both hemispheres 39.8
1996 Male, age 80, right hemisphere 39.3
2772 Female, age 79, unknown 37.2
Globus pallidus, internus
nTPM: 41.1
2566 Female, age 72, unknown 44.6
2287 Male, age 75, right hemisphere 43.9
1818 Male, age 74, unknown 40.9
2778 Female, age 91, both hemispheres 40.8
2037 Male, age 80, right hemisphere 40.4
2111 Female, age 85, right hemisphere 38.7
2483 Female, age 94, right hemisphere 38.4
Nucleus accumbens
nTPM: 51.2
1856 Female, age 91, right hemisphere 57.4
1783 Male, age 74, unknown 56.8
2824 Male, age 61, right hemisphere 56.8
2698 Female, age 72, unknown 52.6
2286 Male, age 75, left hemisphere 49.7
1806 Female, age 85, left hemisphere 48.9
2391 Female, age 94, left hemisphere 43.8
2732 Male, age 80, right hemisphere 43.6
Nucleus basalis of Meynert
nTPM: 47.7
2821 Male, age 75, both hemispheres 51.5
2569 Male, age 61, both hemispheres 48.0
2484 Female, age 94, left hemisphere 47.0
2393 Male, age 80, right hemisphere 44.3
Nucleus of the diagonal band
nTPM: 50.0
2029 Male, age 61, right hemisphere 53.4
2195 Female, age 85, both hemispheres 53.1
1979 Male, age 74, unknown 49.0
2775 Male, age 80, right hemisphere 48.5
1812 Female, age 91, both hemispheres 46.2
Olfactory tubercle
nTPM: 49.6
1998 Female, age 91, both hemispheres 51.2
2856 Male, age 75, right hemisphere 49.9
1846 Male, age 80, right hemisphere 48.9
2487 Female, age 94, left hemisphere 48.3
Putamen
nTPM: 50.4
1838 Male, age 80, right hemisphere 54.4
2647 Male, age 75, left hemisphere 54.1
1829 Male, age 74, unknown 53.3
1937 Female, age 91, right hemisphere 49.5
2466 Female, age 79, unknown 48.4
2489 Female, age 72, unknown 48.2
2482 Female, age 94, left hemisphere 45.2
Septal nuclei
nTPM: 46.7
2629 Female, age 94, right hemisphere 52.3
1960 Male, age 74, unknown 50.5
2059 Female, age 85, both hemispheres 49.8
2031 Female, age 72, unknown 49.7
2009 Female, age 91, both hemispheres 44.5
2394 Male, age 61, left hemisphere 41.6
2199 Male, age 80, right hemisphere 38.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 34.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.6
Samples: 246

Max nTPM: 48.1
Min nTPM: 11.4
Std nTPM: 6.7
Median nTPM: 27.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 48.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 47.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 47.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 46.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 46.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 45.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 44.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 43.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 42.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 42.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 42.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.4
Samples: 246

Max nTPM: 65.6
Min nTPM: 7.5
Std nTPM: 10.6
Median nTPM: 33.9
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 65.6
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 62.3
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 62.0
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 59.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 59.0
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 58.8
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 58.5
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 56.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 56.0
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 55.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 54.9
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Brain - Putamen (basal ganglia)
Average nTPM: 26.9
Samples: 205

Max nTPM: 44.4
Min nTPM: 11.9
Std nTPM: 6.4
Median nTPM: 26.3
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 44.4
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 42.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 40.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 40.7
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 39.9
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 39.7
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 39.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 39.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 39.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 38.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 38.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 88.8
FF:10164-103B2 76 years, female 88.8
Globus pallidus
Scaled Tags Per Million: 75.0
FF:10161-103A8 76 years, female 75.8
FF:10175-103C4 60 years, female 74.2
Nucleus accumbens
Scaled Tags Per Million: 111.5
FF:10037-101F1 23-56 years, mixed 111.5
Putamen
Scaled Tags Per Million: 107.3
FF:10176-103C5 60 years, female 107.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 41.9
Pig sample Sample description nTPM
Caudate
nTPM: 36.9
Samples: 4

Max nTPM: 41.4
Min nTPM: 34.8
Sample A Female 35.1
Sample B Female 36.4
Sample C Male 41.4
Sample D Male 34.8
Putamen
nTPM: 34.0
Samples: 4

Max nTPM: 38.2
Min nTPM: 26.6
Sample A Female 36.8
Sample B Female 26.6
Sample C Male 34.2
Sample D Male 38.2
Septum
nTPM: 41.9
Samples: 4

Max nTPM: 45.4
Min nTPM: 36.8
Sample A Female 44.7
Sample B Female 40.8
Sample C Male 45.4
Sample D Male 36.8
Ventral pallidum
nTPM: 38.4
Samples: 4

Max nTPM: 44.7
Min nTPM: 31.9
Sample A Female 31.9
Sample B Female 37.6
Sample C Male 44.7
Sample D Male 39.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 67.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 67.8
Samples: 4

Max nTPM: 80.5
Min nTPM: 58.8
Sample A Male 72.8
Sample B Male 80.5
Sample C Female 58.9
Sample D Female 58.8
Septum
nTPM: 49.9
Samples: 4

Max nTPM: 56.3
Min nTPM: 46.1
Sample A Male 56.3
Sample B Male 46.9
Sample C Female 46.1
Sample D Female 50.3
Ventral forebrain
nTPM: 61.3
Samples: 4

Max nTPM: 65.4
Min nTPM: 57.2
Sample A Male 65.4
Sample B Male 57.6
Sample C Female 65.0
Sample D Female 57.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.3
69059844 Antisense, RP_050317_04_B10, Mouse strain C57BL/6J (56 days, male) 12.3
Pallidum
Expression energy: 10.4
69059844 Antisense, RP_050317_04_B10, Mouse strain C57BL/6J (56 days, male) 10.4

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