MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:38.8 nTPM
HPA:38.8 nTPM
GTEx:47.3 nTPM
FANTOM5:139.2 Scaled Tags Per Million
Pig:32.2 nTPM
Mouse:17.3 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.4
1870 Female, age 42, unknown 34.6
2411 Female, age 72, unknown 34.6
2019 Male, age 18, unknown 33.9
1830 Male, age 51, unknown 33.7
1833 Male, age 53, unknown 33.2
2828 Female, age 72, unknown 32.7
2586 Male, age 75, left hemisphere 30.7
1827 Male, age 72, unknown 27.8
2219 Male, age 76, both hemispheres 27.2
2666 Male, age 74, left hemisphere 25.6
Dorsal raphe nucleus
nTPM: 34.3
2016 Female, age 72, unknown 40.7
1828 Male, age 53, unknown 36.7
2298 Female, age 72, unknown 33.3
2750 Male, age 76, both hemispheres 32.9
2047 Male, age 72, unknown 28.0
Inferior colliculus
nTPM: 31.6
1890 Male, age 53, unknown 34.4
2097 Female, age 72, unknown 33.9
2849 Male, age 72, unknown 30.3
1848 Female, age 42, unknown 27.7
Median raphe nucleus
nTPM: 23.8
2220 Male, age 76, midline 23.8
Pedunculopontine tegmental nucleus
nTPM: 30.3
2334 Male, age 80, both hemispheres 33.7
1921 Female, age 85, both hemispheres 30.4
2338 Male, age 61, both hemispheres 26.7
Periaquaductal grey, anterior
nTPM: 33.1
2502 Female, age 75, unknown 40.6
1795 Male, age 51, unknown 30.8
1947 Male, age 18, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 38.8
2850 Male, age 76, both hemispheres 44.3
1840 Male, age 53, unknown 42.2
2464 Female, age 72, unknown 35.7
1831 Male, age 72, unknown 33.1
Periaquaductal grey, lateral
nTPM: 37.0
2140 Male, age 76, both hemispheres 41.1
2053 Male, age 18, unknown 36.2
2272 Male, age 74, both hemispheres 33.8
Pretectal area
nTPM: 31.8
2273 Male, age 74, both hemispheres 58.3
2407 Male, age 75, both hemispheres 38.7
2224 Female, age 72, unknown 34.1
2825 Male, age 18, unknown 32.0
2667 Female, age 75, unknown 31.6
2316 Male, age 76, right hemisphere 30.9
1817 Female, age 42, unknown 26.8
1815 Male, age 53, unknown 25.8
2007 Male, age 72, unknown 25.8
1944 Female, age 72, unknown 23.9
1816 Male, age 51, unknown 21.7
Red nucleus
nTPM: 38.3
2769 Male, age 72, unknown 42.1
1904 Male, age 53, unknown 41.8
1954 Female, age 42, unknown 41.8
2227 Male, age 72, unknown 41.4
1865 Male, age 51, unknown 41.2
1821 Female, age 72, unknown 39.4
2503 Female, age 72, unknown 37.8
2823 Male, age 76, right hemisphere 37.7
2725 Female, age 75, unknown 37.5
2785 Male, age 18, unknown 36.3
2584 Male, age 75, left hemisphere 31.7
2588 Male, age 74, left hemisphere 31.3
Substantia nigra
nTPM: 31.4
2699 Male, age 18, unknown 40.3
1851 Male, age 51, unknown 36.6
2241 Male, age 72, unknown 33.2
2409 Female, age 72, unknown 32.7
2583 Male, age 75, right hemisphere 32.6
2590 Female, age 75, unknown 31.3
2665 Male, age 74, both hemispheres 27.5
1916 Female, age 42, unknown 27.1
1889 Female, age 72, unknown 27.0
1941 Male, age 53, unknown 25.6
Superior colliculus
nTPM: 32.0
1995 Male, age 72, unknown 48.9
2664 Male, age 75, both hemispheres 38.9
1913 Female, age 42, unknown 37.5
2587 Male, age 74, left hemisphere 32.5
1839 Male, age 51, unknown 32.3
1895 Male, age 76, right hemisphere 27.8
1796 Male, age 53, unknown 26.8
2261 Male, age 18, unknown 26.1
2087 Female, age 72, unknown 25.0
2668 Female, age 75, unknown 24.4
Ventral tegmental area
nTPM: 31.4
2021 Male, age 53, unknown 35.3
1942 Male, age 51, unknown 33.7
2410 Female, age 72, unknown 32.4
1915 Female, age 42, unknown 30.2
2223 Female, age 72, unknown 29.7
2218 Male, age 76, both hemispheres 26.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.3
Samples: 139

Max nTPM: 137.7
Min nTPM: 16.0
Std nTPM: 19.5
Median nTPM: 43.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 137.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 108.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 96.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 91.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 90.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 86.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 82.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 77.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 76.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 75.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 72.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 139.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.2
FF:10158-103A5 76 years, female 139.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.2
Pig sample Sample description nTPM
Midbrain
nTPM: 31.9
Samples: 4

Max nTPM: 51.3
Min nTPM: 20.1
Sample A Female 51.3
Sample B Female 32.7
Sample C Male 20.1
Sample D Male 23.5
Periaqueductal gray
nTPM: 26.6
Samples: 3

Max nTPM: 28.4
Min nTPM: 24.4
Sample B Female 28.4
Sample C Male 24.4
Sample D Male 26.9
Substantia nigra
nTPM: 32.2
Samples: 4

Max nTPM: 50.4
Min nTPM: 23.4
Sample A Female 29.4
Sample B Female 23.4
Sample C Male 25.6
Sample D Male 50.4
Superior colliculi
nTPM: 28.3
Samples: 4

Max nTPM: 35.6
Min nTPM: 19.1
Sample A Female 35.6
Sample B Female 19.1
Sample C Male 27.4
Sample D Male 31.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 18.3
Min nTPM: 15.8
Sample A Male 17.7
Sample B Male 18.3
Sample C Female 17.6
Sample D Female 15.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
71717592 Antisense, RP_050614_04_F12, Mouse strain C57BL/6J (56 days, male) 0.5
70473999 Antisense, RP_050614_04_F12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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